View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12528_low_19 (Length: 297)
Name: NF12528_low_19
Description: NF12528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12528_low_19 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 20 - 284
Target Start/End: Complemental strand, 44375735 - 44375458
Alignment:
| Q |
20 |
aaaagtgtaatgatcatatatttaatcatg----ttttgcccgttaaaattgtaggggtcgtatatttaatcccgtgaaatttgctaatagataaaaact |
115 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44375735 |
aaaagtgtaatgatcgtatatttaatcatgcatgtttcgcccgttaaaattgtaggggtcgtatatttaatcccgtgaaatttgctaatagataaaaact |
44375636 |
T |
|
| Q |
116 |
acctattttttgaattaggtcaatcaatttggtcttaa-nnnnnnnnacaagcaatttggtcttaatattagctcgtatctaatttactcttaaattaat |
214 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| | |
|
|
| T |
44375635 |
accttttttttgaattaggtcaatcaatttggtcttaatttttttttacaagcaatttggtcttaatattagctcgtatctaatttactgttaaattatt |
44375536 |
T |
|
| Q |
215 |
tc--------ataaattaggccctaaattacatcgcttagcaaattacataactcaactcttcatactacatttcttc |
284 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44375535 |
tcatttactgataaattaggccctaaattacatcgcttagcaaattacataactcaactcttcatactacatttcttc |
44375458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University