View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12528_low_22 (Length: 266)
Name: NF12528_low_22
Description: NF12528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12528_low_22 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 44375435 - 44375181
Alignment:
| Q |
1 |
ctcttcctactacattgcgtcnnnnnnngacttcctactatacatattttgatacactacactcgcagaaactaatcatgaacacacatgaacacgtagc |
100 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44375435 |
ctcttcctactacattgcgtcaaaaaaagacttcctactatacatattttgatgcactacactcgcagaaactaatcatgaacacacatgaacacgtagc |
44375336 |
T |
|
| Q |
101 |
gacgcttaataaacaaagaacatagatgaacacattaaagtggaagaaatcacaaaagctcaaccatttatgtacatgtacaatgtactaagtgagagag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44375335 |
gacgcttaataaacaaagaacatagatgaacacattaaagtggtagaaatcacaaaagctcaaccatttatgtacatgtacaatgtactaagtgagagag |
44375236 |
T |
|
| Q |
201 |
atattgtgcattcagtcattcacattaaggtcactaccatctatgcctatgcttc |
255 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44375235 |
atattgtgcattcagtcattcacattaaggtcactaccatctatgcctatgcttc |
44375181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University