View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12528_low_28 (Length: 236)

Name: NF12528_low_28
Description: NF12528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12528_low_28
NF12528_low_28
[»] chr5 (14 HSPs)
chr5 (8-218)||(31395993-31396206)
chr5 (14-218)||(31416196-31416403)
chr5 (8-218)||(31493776-31493989)
chr5 (68-218)||(31281666-31281816)
chr5 (68-218)||(31505603-31505753)
chr5 (70-218)||(31279194-31279342)
chr5 (71-218)||(31317592-31317739)
chr5 (68-218)||(31284951-31285101)
chr5 (68-218)||(31475648-31475798)
chr5 (70-218)||(31643589-31643737)
chr5 (68-218)||(40843030-40843180)
chr5 (70-218)||(31407131-31407279)
chr5 (158-218)||(31368806-31368866)
chr5 (72-211)||(31313490-31313632)
[»] chr4 (1 HSPs)
chr4 (22-218)||(8039371-8039569)
[»] chr3 (1 HSPs)
chr3 (76-213)||(25708676-25708825)


Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 8 - 218
Target Start/End: Complemental strand, 31396206 - 31395993
Alignment:
Q  8 gagagagaagaacgaagaataataagacactaactataacaaactccaa---tagctaacaataatttaatcttcatgagttgtacaattaaacatccga 104  Q
    |||| |||||||| |||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||    
T  31396206 gagaaagaagaacaaagaataataagacactaactataacaaactccaacaatagctaacaataatttaatcttcatgagttgtacaattaaacatccga 31396107  T
Q  105 gataaaagtacataagatccacttcaaatccacactgaatttgcctcgacaagctaagtgacatcatagaaaaggcagcacatgaaattagactatatgc 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31396106 gataaaagtacataagatccacttcaaatccacactgaatttgcctcgacaagctaagtgacatcatagaaaaggcagcacatgaaattagactatatgc 31396007  T
Q  205 atctggttttccat 218  Q
    ||||||||||||||    
T  31396006 atctggttttccat 31395993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 14 - 218
Target Start/End: Original strand, 31416196 - 31416403
Alignment:
Q  14 gaagaacgaagaataataagacactaactataacaaactccaa---tagctaacaataatttaatcttcatgagttgtacaattaaacatccgagataaa 110  Q
    ||||| ||||||||||||| ||| || ||||||||||||||||   |||||||| | ||||||||||||||||||||||||||||||||||| |||||||    
T  31416196 gaagaccgaagaataataacacagtagctataacaaactccaacaatagctaacgacaatttaatcttcatgagttgtacaattaaacatcctagataaa 31416295  T
Q  111 agtacataagatccacttcaaatccacactgaatttgcctcgacaagctaagtgacatcatagaaaaggcagcacatgaaattagactatatgcatctgg 210  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||| ||||||||| |||||||||||||    
T  31416296 agtacataagatcaacttcaaatccacactgaatttgcctcgacaagctaagtgacatcatagaaaaagaagtacacgaaattagagtatatgcatctgg 31416395  T
Q  211 ttttccat 218  Q
    ||||||||    
T  31416396 ttttccat 31416403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 8 - 218
Target Start/End: Original strand, 31493776 - 31493989
Alignment:
Q  8 gagagagaagaacgaagaataataagacactaactataacaaactccaa---tagctaacaataatttaatcttcatgagttgtacaattaaacatccga 104  Q
    |||| |||||| ||||||||||||||||| || ||||||||||||||||   ||| ||||| ||||||||||||| ||||||||||||||||| |||| |    
T  31493776 gagaaagaagaccgaagaataataagacagtagctataacaaactccaacaatagataacagtaatttaatcttcgtgagttgtacaattaaatatccta 31493875  T
Q  105 gataaaagtacataagatccacttcaaatccacactgaatttgcctcgacaagctaagtgacatcatagaaaaggcagcacatgaaattagactatatgc 204  Q
    | |||||||| |||||||| ||||||||||| ||||||||||| |||||||||||||| ||||| |||| ||||||||||||||  ||||||||||||||    
T  31493876 ggtaaaagtaaataagatcgacttcaaatccgcactgaatttggctcgacaagctaagcgacatgatagcaaaggcagcacatgttattagactatatgc 31493975  T
Q  205 atctggttttccat 218  Q
    ||||||||||||||    
T  31493976 atctggttttccat 31493989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 68 - 218
Target Start/End: Complemental strand, 31281816 - 31281666
Alignment:
Q  68 aatttaatcttcatgagttgtacaattaaacatccgagataaaagtacataagatccacttcaaatccacactgaatttgcctcgacaagctaagtgaca 167  Q
    ||||||| |||||||||||| |||||||||||||||||| ||| ||| | |||||||||| | ||||| |||||| |||||||  |||| || |||||||    
T  31281816 aatttaaccttcatgagttgcacaattaaacatccgagaaaaatgtaaagaagatccactacgaatccgcactgagtttgccttaacaaacttagtgaca 31281717  T
Q  168 tcatagaaaaggcagcacatgaaattagactatatgcatctggttttccat 218  Q
    | |||| |||||| ||||||||||||||||| |||||||||||||||||||    
T  31281716 tgatagcaaaggcggcacatgaaattagactgtatgcatctggttttccat 31281666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 68 - 218
Target Start/End: Original strand, 31505603 - 31505753
Alignment:
Q  68 aatttaatcttcatgagttgtacaattaaacatccgagataaaagtacataagatccacttcaaatccacactgaatttgcctcgacaagctaagtgaca 167  Q
    |||||||||||||| |||||||||||||||||||||||| ||||||| | ||||||||| |||||||| |||||| |||||| |||||| || || ||||    
T  31505603 aatttaatcttcattagttgtacaattaaacatccgagaaaaaagtaaagaagatccacctcaaatccgcactgagtttgccgcgacaaactgagcgaca 31505702  T
Q  168 tcatagaaaaggcagcacatgaaattagactatatgcatctggttttccat 218  Q
    | |||| ||||| ||||| |||||| || ||||||||||||||||| ||||    
T  31505703 tgatagcaaaggaagcacttgaaatgaggctatatgcatctggtttcccat 31505753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 70 - 218
Target Start/End: Original strand, 31279194 - 31279342
Alignment:
Q  70 tttaatcttcatgagttgtacaattaaacatccgagataaaagtacataagatccacttcaaatccacactgaatttgcctcgacaagctaagtgacatc 169  Q
    |||||||||||||||||||||||||| |||||| ||| ||||||| | |||||| ||||||||||| |||||| |||||| |||||| |||||||||||     
T  31279194 tttaatcttcatgagttgtacaattagacatccaagaaaaaagtaaagaagatcaacttcaaatccgcactgagtttgccgcgacaaactaagtgacatg 31279293  T
Q  170 atagaaaaggcagcacatgaaattagactatatgcatctggttttccat 218  Q
    |||| ||||| |||||||||||| || |||||| |||| ||||| ||||    
T  31279294 atagcaaaggaagcacatgaaatgaggctatatccatcaggtttcccat 31279342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 71 - 218
Target Start/End: Complemental strand, 31317739 - 31317592
Alignment:
Q  71 ttaatcttcatgagttgtacaattaaacatccgagataaaagtacataagatccacttcaaatccacactgaatttgcctcgacaagctaagtgacatca 170  Q
    ||||||||||||||||| ||||||| |||||| ||  |||| || | |||||| | ||||||||| |||||| ||||||| ||||| ||||||||||| |    
T  31317739 ttaatcttcatgagttgaacaattagacatcccaggaaaaaataaagaagatcaatttcaaatccccactgagtttgccttgacaaactaagtgacataa 31317640  T
Q  171 tagaaaaggcagcacatgaaattagactatatgcatctggttttccat 218  Q
    ||| |||||||||||||||||||| |||||||||||||||||| ||||    
T  31317639 tagcaaaggcagcacatgaaattaaactatatgcatctggtttcccat 31317592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 68 - 218
Target Start/End: Complemental strand, 31285101 - 31284951
Alignment:
Q  68 aatttaatcttcatgagttgtacaattaaacatccgagataaaagtacataagatccacttcaaatccacactgaatttgcctcgacaagctaagtgaca 167  Q
    |||||||||||||||||||| |||||||||||||||||| ||||||| | || ||| ||||||||||| || ||| ||||||  ||||| || | | |||    
T  31285101 aatttaatcttcatgagttgcacaattaaacatccgagaaaaaagtaaagaaaatcgacttcaaatccgcattgagtttgccgtgacaaactcattaaca 31285002  T
Q  168 tcatagaaaaggcagcacatgaaattagactatatgcatctggttttccat 218  Q
    | |||||||||| |||||||||||| || ||||||||||||||||||||||    
T  31285001 tgatagaaaaggaagcacatgaaatgaggctatatgcatctggttttccat 31284951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 68 - 218
Target Start/End: Original strand, 31475648 - 31475798
Alignment:
Q  68 aatttaatcttcatgagttgtacaattaaacatccgagataaaagtacataagatccacttcaaatccacactgaatttgcctcgacaagctaagtgaca 167  Q
    ||||||||||||||||||   ||| ||| |||||||||| ||||||| | |||||||||||| ||||||||||||  ||||||||| || || |||||||    
T  31475648 aatttaatcttcatgagtaacacagttagacatccgagaaaaaagtaaagaagatccacttcgaatccacactgagattgcctcgagaaactcagtgaca 31475747  T
Q  168 tcatagaaaaggcagcacatgaaattagactatatgcatctggttttccat 218  Q
    | |||| |||||||||||| ||||| || ||||| ||||||||||||||||    
T  31475748 tgatagcaaaggcagcacaagaaatgaggctataagcatctggttttccat 31475798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 70 - 218
Target Start/End: Original strand, 31643589 - 31643737
Alignment:
Q  70 tttaatcttcatgagttgtacaattaaacatccgagataaaagtacataagatccacttcaaatccacactgaatttgcctcgacaagctaagtgacatc 169  Q
    |||||||||||||||||| ||||||| |||||| ||  ||||||| | |||||| | ||||||||| |||| | ||||| ||||||| |||||||||||     
T  31643589 tttaatcttcatgagttggacaattagacatccaaggaaaaagtaaagaagatcgaattcaaatccgcactcagtttgcgtcgacaaactaagtgacatg 31643688  T
Q  170 atagaaaaggcagcacatgaaattagactatatgcatctggttttccat 218  Q
    |||| ||||| |||||| ||||| || ||||||||||||||||||||||    
T  31643689 atagcaaaggaagcacaagaaatgaggctatatgcatctggttttccat 31643737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 68 - 218
Target Start/End: Original strand, 40843030 - 40843180
Alignment:
Q  68 aatttaatcttcatgagttgtacaattaaacatccgagataaaagtacataagatccacttcaaatccacactgaatttgcctcgacaagctaagtgaca 167  Q
    ||||||||||||||||||   ||| ||| |||||| ||| ||||||| | |||||||||||| |||||||| |||  |||||||||||| || |||||||    
T  40843030 aatttaatcttcatgagtaacacagttagacatccaagaaaaaagtaaagaagatccacttcgaatccacaatgagattgcctcgacaaactcagtgaca 40843129  T
Q  168 tcatagaaaaggcagcacatgaaattagactatatgcatctggttttccat 218  Q
    | |||| |||||||||||| ||||| || ||||| ||||||||||||||||    
T  40843130 tgatagcaaaggcagcacaagaaatgaggctataagcatctggttttccat 40843180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 70 - 218
Target Start/End: Original strand, 31407131 - 31407279
Alignment:
Q  70 tttaatcttcatgagttgtacaattaaacatccgagataaaagtacataagatccacttcaaatccacactgaatttgcctcgacaagctaagtgacatc 169  Q
    |||||||||||||||||| | ||||| |||||| ||  ||||||| | |||||||||||| | ||||||||||  |||||| |||||||| | ||||||     
T  31407131 tttaatcttcatgagttgcataattagacatccaaggaaaaagtaaagaagatccacttcgattccacactgagattgccttgacaagctcattgacatg 31407230  T
Q  170 atagaaaaggcagcacatgaaattagactatatgcatctggttttccat 218  Q
    |||| |||||| ||||||||||| |  ||||||||||||||||||||||    
T  31407231 atagcaaaggcggcacatgaaatcaagctatatgcatctggttttccat 31407279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 158 - 218
Target Start/End: Complemental strand, 31368866 - 31368806
Alignment:
Q  158 ctaagtgacatcatagaaaaggcagcacatgaaattagactatatgcatctggttttccat 218  Q
    ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  31368866 ctaagtgacataatagcaaaggcagcacatgaaattagactatatgcatctggtttcccat 31368806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 211
Target Start/End: Complemental strand, 31313632 - 31313490
Alignment:
Q  72 taatcttcatgagttgtacaattaaacatccgagataaaagtacataagatccacttcaaatccacactgaatttg---cctcgacaagctaagtgacat 168  Q
    |||||||||||||||| |  |||| |||||| |||  ||| || | |||||| | ||||||||| || |||||||    ||||||||| ||||| | | |    
T  31313632 taatcttcatgagttgcatcattagacatccaagaagaaaatatagaagatcgatttcaaatccgcattgaattttgttcctcgacaaactaagcgccgt 31313533  T
Q  169 catagaaaaggcagcacatgaaattagactatatgcatctggt 211  Q
     | || |||||  ||||||||||| ||||||||||||||||||    
T  31313532 gacagcaaaggatgcacatgaaatgagactatatgcatctggt 31313490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 82; Significance: 7e-39; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 22 - 218
Target Start/End: Complemental strand, 8039569 - 8039371
Alignment:
Q  22 aagaataataagacactaactataacaaactccaa---tagctaacaataatttaatcttcatgagttgtacaattaaacatccgagataaaagtacata 118  Q
    ||||||||||||||| || ||||||||||||||||   ||   ||| | ||||||||||| |||||||||||||||||||||| ||||||| |||||||     
T  8039569 aagaataataagacagtagctataacaaactccaacaataatcaacgacaatttaatctttatgagttgtacaattaaacatc-gagataagagtacatg 8039471  T
Q  119 agatccacttcaaatccacactgaatttgcctcgacaagctaagtgacatcatagaaaaggcagcacatgaaattagactatatgcatctggttttccat 218  Q
    |||| |||||| ||||| ||||||||||| ||| ||||  ||||||| || |||| |||||  | |||||||||||||||||||||||| ||||||||||    
T  8039470 agattcacttcgaatccgcactgaatttgtctcaacaaattaagtgaaatgataggaaaggatgtacatgaaattagactatatgcatcaggttttccat 8039371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 76 - 213
Target Start/End: Complemental strand, 25708825 - 25708676
Alignment:
Q  76 cttcatgagttgtacaattaaacatccgagataaaagtacataagatccacttcaaatccacactgaatttgcctc------------gacaagctaagt 163  Q
    |||||||||||| ||||||| |||||| ||| |||| || | |||||| |||||||||||||||||| |||| |||            ||||| || |||    
T  25708825 cttcatgagttgcacaattagacatccaagaaaaaaataaagaagatcaacttcaaatccacactgagtttgtctctcagtttgtctcgacaaactgagt 25708726  T
Q  164 gacatcatagaaaaggcagcacatgaaattagactatatgcatctggttt 213  Q
    ||||| |||| |||||||||||||||||| || ||||| |||||||||||    
T  25708725 gacatgatagcaaaggcagcacatgaaatgaggctataagcatctggttt 25708676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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