View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12528_low_29 (Length: 227)
Name: NF12528_low_29
Description: NF12528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12528_low_29 |
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Alignment Details
Target: chr7 (Bit Score: 141; Significance: 4e-74; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 34 - 210
Target Start/End: Complemental strand, 6959082 - 6958906
Alignment:
| Q |
34 |
tagagaacaaaacataatgtttgtaaactaaatatcacacctgcaagttggaattacgtcttcctcgacatctcttgaccacagtgaccactccaactgc |
133 |
Q |
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| T |
6959082 |
tagagaacaaaacataatatttgtaaactaaatatcacacctgcaagttggaattacgtcttcctcaacatctcttgaccacagtgaccactccaactgc |
6958983 |
T |
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| Q |
134 |
acagctgttatcggatgaactgcgtgtgctcttctgattgttgcaggcgaggcctcagacaaaccgatgtattttat |
210 |
Q |
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| T |
6958982 |
acagctgttattggatgaactgcatgtgctcttctgattgttgaagctgaggcttcagacaaaccaatgtattttat |
6958906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 34 - 210
Target Start/End: Original strand, 6921949 - 6922123
Alignment:
| Q |
34 |
tagagaacaaaacataatgtttgtaaactaaatatcacacctgcaagttggaattacgtcttcctcgacatctcttgaccacagtgaccactccaactgc |
133 |
Q |
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| T |
6921949 |
tagataacaaaacacaatgtttgcaaactaaat-tc-cacctgcaagttggaattatgtcttcctcgacatctcttgaccatagtgaccactccaactgc |
6922046 |
T |
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| Q |
134 |
acagctgttatcggatgaactgcgtgtgctcttctgattgttgcaggcgaggcctcagacaaaccgatgtattttat |
210 |
Q |
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| T |
6922047 |
acagctgttattggatgaactgcatgtgctcttctgattgttgcagctgaggcctcagacaaaccaatgtattttat |
6922123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 34 - 210
Target Start/End: Complemental strand, 6956263 - 6956089
Alignment:
| Q |
34 |
tagagaacaaaacataatgtttgtaaactaaatatcacacctgcaagttggaattacgtcttcctcgacatctcttgaccacagtgaccactccaactgc |
133 |
Q |
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| T |
6956263 |
tagataacaaaacacaatgtttgcaaactaaat-tc-cacctgcaagttggaattatgtcttcctcgacatctcttgaccatagtgaccactccaactgc |
6956166 |
T |
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| Q |
134 |
acagctgttatcggatgaactgcgtgtgctcttctgattgttgcaggcgaggcctcagacaaaccgatgtattttat |
210 |
Q |
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| T |
6956165 |
acagctgttattggatgaactgcatgtgctcttctgattgttgcagctgaggcctcagacaaaccaatgtattttat |
6956089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 39 - 210
Target Start/End: Original strand, 6969197 - 6969366
Alignment:
| Q |
39 |
aacaaaacataatgtttgtaaactaaatatcacacctgcaagttggaattacgtcttcctcgacatctcttgaccacagtgaccactccaactgcacagc |
138 |
Q |
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| T |
6969197 |
aacataacataatgtttgtaaactaaat--caaacctgcaagttggaattatttcttcttccacatctcttgaccatagcgaccactccaattgcacagc |
6969294 |
T |
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| Q |
139 |
tgttatcggatgaactgcgtgtgctcttctgattgttgcaggcgaggcctcagacaaaccgatgtattttat |
210 |
Q |
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| T |
6969295 |
tgttattggatgaactgcatgtgctcttctgattgttgaagctgaggcttcagacaaaccaatgtattttat |
6969366 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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