View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12528_low_8 (Length: 467)
Name: NF12528_low_8
Description: NF12528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12528_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 405; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 52 - 460
Target Start/End: Original strand, 36840288 - 36840696
Alignment:
| Q |
52 |
ctcccatgtctaggtgcttattataagccctaaaaacatattgtaaactttttatagatgcatttatactgtaacaatgttaaactttatccacctgcat |
151 |
Q |
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| T |
36840288 |
ctcccatgtctaggtgcttattataagccctaaaaacatattgtaaactttttatagatgcatttatactgtaacaatgttaaactttatccacctgcat |
36840387 |
T |
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| Q |
152 |
ttctatacgtaggccaatgatatgaggagcctagaaaatactgattctcaatatagacgaagcgctgagccgatcttattgcttttacataagcagcatg |
251 |
Q |
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| T |
36840388 |
ttctatacgtaggccaatgatatgaggagcctagaaaatactgattctcaatataaacgaagcgctgagccgatcttattgcttttacataagcagcatg |
36840487 |
T |
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| Q |
252 |
gatgctttggtcaacttttaagttttttccacataaaagattctgcagaaagttgataataataagagaagttaaacataaagactaattgaattcagta |
351 |
Q |
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| T |
36840488 |
gatgctttggtcaacttttaagttttttccacataaaagattctgcagaaagttgataataataagagaagttaaacataaagactaattgaattcagta |
36840587 |
T |
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| Q |
352 |
gaaaactagaaatcacaccacaatgcaaattaagttgatgaaaataatgaagcacttaaggcataagtggacatcacgtacaatcttgttctcacctgag |
451 |
Q |
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| T |
36840588 |
gaaaactagaaatcacaccacaatgcaaattaagttgatgaaaataatgaagcacttaaggcataagtggacatcacgtacaatcttgttctcacctgag |
36840687 |
T |
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| Q |
452 |
cctttgctt |
460 |
Q |
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| T |
36840688 |
cctttgctt |
36840696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 249 - 316
Target Start/End: Original strand, 36829282 - 36829349
Alignment:
| Q |
249 |
atggatgctttggtcaacttttaagttttttccacataaaagattctgcagaaagttgataataataa |
316 |
Q |
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| T |
36829282 |
atggatgctttggtcaacttttaagtatttttcatataaaagattcagcagaaagttgatattaataa |
36829349 |
T |
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