View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12528_low_9 (Length: 466)
Name: NF12528_low_9
Description: NF12528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12528_low_9 |
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| [»] scaffold0562 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 18 - 458
Target Start/End: Original strand, 3877724 - 3878163
Alignment:
| Q |
18 |
atttatactcttccaaaaagacaggctataaggatttccatcaataggaagaaaattcaataacattattttatttttatgaaagttgtcatggtagaaa |
117 |
Q |
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||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3877724 |
atttatactcttccaaaaagacaagcgataaggatttccatcaataggaagaaaattcaataacattattttatttttatgaaagttgtcatggtagaaa |
3877823 |
T |
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| Q |
118 |
attcaataaccaatttttgtttgatgtgttctaatttcaagatttgtgaatgtaattttgcagtttgtgatggttatattgaaggggtcagttccaatat |
217 |
Q |
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| T |
3877824 |
attcaataaccaatttt-gtttgatgtgttctaatttcaagatttgtgaatgtaattttgcagtttgtgatggttatattgaaggggtcagttccaatat |
3877922 |
T |
|
| Q |
218 |
cgtttgaaagtaacaaagaaccagctgcatatggtgaactagtttcaatgggtggcattaattcagaagtgaagaagaatctaatcagtaccattggcac |
317 |
Q |
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| T |
3877923 |
cgtttgaaagtaacaaagaaccagctgcatatggtgaactagtttcaatgggtggcattaattcagaagtgaagaagaatctaatcagtaccattggcac |
3878022 |
T |
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| Q |
318 |
aatcttggaatccaacctatctataccaagaacaagattttttcttaaagtctttgacaccttggttctaaaagttgaaaataggtccaagctgtagtga |
417 |
Q |
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| T |
3878023 |
aatcttggaatccaacctatctataccaagaacaagattttttctcaaagtctttgacaccttggttctaaaagttgaaaataggtccaagctgtagtga |
3878122 |
T |
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| Q |
418 |
tannnnnnnatttagtcttgatttgtcacaattcctatgct |
458 |
Q |
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| T |
3878123 |
tatttttttatttagtcttgatttgtcacaattcctatgct |
3878163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0562 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: scaffold0562
Description:
Target: scaffold0562; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 18 - 458
Target Start/End: Original strand, 8561 - 8999
Alignment:
| Q |
18 |
atttatactcttccaaaaagacaggctataaggatttccatcaataggaagaaaattcaataacattattttatttttatgaaagttgtcatggtagaaa |
117 |
Q |
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||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
8561 |
atttatactcttccaaaaagacaagcgataaggatttccatcaataggaagaaaattcaataacattattttatttt-atgaaagttgtcatggtagaaa |
8659 |
T |
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| Q |
118 |
attcaataaccaatttttgtttgatgtgttctaatttcaagatttgtgaatgtaattttgcagtttgtgatggttatattgaaggggtcagttccaatat |
217 |
Q |
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| T |
8660 |
attcaataaccaatttt-gtttgatgtgttctaatttcaagatttgtgaatgtaattttgcagtttgtgatggttatattgaaggggtcagttccaatat |
8758 |
T |
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| Q |
218 |
cgtttgaaagtaacaaagaaccagctgcatatggtgaactagtttcaatgggtggcattaattcagaagtgaagaagaatctaatcagtaccattggcac |
317 |
Q |
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| T |
8759 |
cgtttgaaagtaacaaagaaccagctgcatatggtgaactagtttcaatgggtggcattaattcagaagtgaagaagaatctaatcagtaccattggcac |
8858 |
T |
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| Q |
318 |
aatcttggaatccaacctatctataccaagaacaagattttttcttaaagtctttgacaccttggttctaaaagttgaaaataggtccaagctgtagtga |
417 |
Q |
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| T |
8859 |
aatcttggaatccaacctatctataccaagaacaagattttttctcaaagtctttgacaccttggttctaaaagttgaaaataggtccaagctgtagtga |
8958 |
T |
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| Q |
418 |
tannnnnnnatttagtcttgatttgtcacaattcctatgct |
458 |
Q |
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| T |
8959 |
tatttttttatttagtcttgatttgtcacaattcctatgct |
8999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 172 - 374
Target Start/End: Complemental strand, 25918268 - 25918066
Alignment:
| Q |
172 |
attttgcagtttgtgatggttatattgaaggggtcagttccaatatcgtttgaaagtaacaaagaaccagctgcatatggtgaactagtttcaatgggtg |
271 |
Q |
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|||||||||||||||||||| ||||||| || || |||||||| |||||| ||||||||||||||||||| |||| |||| || | |||||||||| |
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| T |
25918268 |
attttgcagtttgtgatggtcctattgaaatcatctgtgccaatatcatttgaaggtaacaaagaaccagctgcttatgctgaaataatatcaatgggtg |
25918169 |
T |
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| Q |
272 |
gcattaattcagaagtgaagaagaatctaatcagtaccattggcacaatcttggaatccaacctatctataccaagaacaagattttttcttaaagtctt |
371 |
Q |
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| T |
25918168 |
gtataaacaaagaagtgaagaagaatcttattgctaccattggtactatattgcagtccaagctttctatcccaagaacacgttttttccttaaagtctt |
25918069 |
T |
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| Q |
372 |
tga |
374 |
Q |
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||| |
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| T |
25918068 |
tga |
25918066 |
T |
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