View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12529_low_10 (Length: 225)
Name: NF12529_low_10
Description: NF12529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12529_low_10 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 28872582 - 28872791
Alignment:
| Q |
1 |
atagctgacttgctatcaattctgagctccatcttctcatccttcaccagttgcaattccataagtagcatgttgatccattgagcttgacatgttgtca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28872582 |
atagctgacttgctatcaattctgagctccatcttctcatccttcaccagttgcaattccataagtagcatgttgatccattgagcttgacatgttgtca |
28872681 |
T |
|
| Q |
101 |
tggaagctgcaatgtactcaacctcacaagaacaaagtgcaaccactgattccttcttagaactccatgaaaaaattgcatttccaatcatgaacacata |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28872682 |
tggaagctgcaatgtactcaacctcacaagaacaaagtgcaaccactgattccttcttagaactccatgaaaaaattgcatttccaatcatgaacacata |
28872781 |
T |
|
| Q |
201 |
agctgcagtg |
210 |
Q |
| |
|
|||||||||| |
|
|
| T |
28872782 |
agctgcagtg |
28872791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 9507335 - 9507126
Alignment:
| Q |
1 |
atagctgacttgctatcaattctgagctccatcttctcatccttcaccagttgcaattccataagtagcatgttgatccattgagcttgacatgttgtca |
100 |
Q |
| |
|
||||| || ||||||||||||||||| ||||||||||||||||||| || ||| |||||||| |||| |||||||| ||||||||||||||||| ||||| |
|
|
| T |
9507335 |
atagcagatttgctatcaattctgagttccatcttctcatccttcatcaattgtaattccatcagtaacatgttgaaccattgagcttgacatgctgtca |
9507236 |
T |
|
| Q |
101 |
tggaagctgcaatgtactcaacctcacaagaacaaagtgcaaccactgattccttcttagaactccatgaaaaaattgcatttccaatcatgaacacata |
200 |
Q |
| |
|
||||||||||||||||||| | ||||||||| | | |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
9507235 |
tggaagctgcaatgtactctgcttcacaagaagataatgcaactactgattccttcttagaactccatgaaaaggctgcatttccaatcatgaacacata |
9507136 |
T |
|
| Q |
201 |
agctgcagtg |
210 |
Q |
| |
|
||| |||||| |
|
|
| T |
9507135 |
agcagcagtg |
9507126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 134; Significance: 7e-70; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 27236972 - 27236763
Alignment:
| Q |
1 |
atagctgacttgctatcaattctgagctccatcttctcatccttcaccagttgcaattccataagtagcatgttgatccattgagcttgacatgttgtca |
100 |
Q |
| |
|
||||| || |||||||||||||||||||||||||| ||||||||||| | |||||||||||| ||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
27236972 |
atagcagatttgctatcaattctgagctccatcttttcatccttcactaattgcaattccatcagtagcatgttgatccattgagcttgacatgctgtca |
27236873 |
T |
|
| Q |
101 |
tggaagctgcaatgtactcaacctcacaagaacaaagtgcaaccactgattccttcttagaactccatgaaaaaattgcatttccaatcatgaacacata |
200 |
Q |
| |
|
||||||||||||||||||| ||||| ||||| | |||||||| ||||||||||||||||||||||||||||| ||||||| ||||||| |||||||| |
|
|
| T |
27236872 |
tggaagctgcaatgtactctgcctcagaagaagatagtgcaactactgattccttcttagaactccatgaaaaggctgcattttcaatcataaacacata |
27236773 |
T |
|
| Q |
201 |
agctgcagtg |
210 |
Q |
| |
|
||| |||||| |
|
|
| T |
27236772 |
agcagcagtg |
27236763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 130; Significance: 2e-67; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 53010837 - 53010628
Alignment:
| Q |
1 |
atagctgacttgctatcaattctgagctccatcttctcatccttcaccagttgcaattccataagtagcatgttgatccattgagcttgacatgttgtca |
100 |
Q |
| |
|
||||| || ||||| ||||||||||| |||||||||||||||||||||| |||||||||||| |||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
53010837 |
atagcagatttgctgtcaattctgagttccatcttctcatccttcaccaattgcaattccatcagtaacatgttgatccattgagcttgacatgctgtca |
53010738 |
T |
|
| Q |
101 |
tggaagctgcaatgtactcaacctcacaagaacaaagtgcaaccactgattccttcttagaactccatgaaaaaattgcatttccaatcatgaacacata |
200 |
Q |
| |
|
||||||||||||||||||| | ||||| ||| | |||||||| ||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
53010737 |
tggaagctgcaatgtactctgcttcacaggaagatagtgcaactacttattccttcttagaactccatgaaaaggctgcatttccaatcatgaacacata |
53010638 |
T |
|
| Q |
201 |
agctgcagtg |
210 |
Q |
| |
|
||| |||||| |
|
|
| T |
53010637 |
agccgcagtg |
53010628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 10 - 203
Target Start/End: Complemental strand, 56562910 - 56562717
Alignment:
| Q |
10 |
ttgctatcaattctgagctccatcttctcatccttcaccagttgcaattccataagtagcatgttgatccattgagcttgacatgttgtcatggaagctg |
109 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||| |||||||||||| |||| |||||||||||||| ||||||||||| ||||||||||| || |
|
|
| T |
56562910 |
ttgctatcaattctgagttccatcttctcatccttcaccaattgcaattccatcagtaacatgttgatccatttagcttgacatgctgtcatggaagttg |
56562811 |
T |
|
| Q |
110 |
caatgtactcaacctcacaagaacaaagtgcaaccactgattccttcttagaactccatgaaaaaattgcatttccaatcatgaacacataagc |
203 |
Q |
| |
|
|||||||||| | ||||| ||| | |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
56562810 |
caatgtactctgcttcacatgaagatagtgcaactactgattccttcttagaactccatgaaaaggctgcatttccaatcatgaacacataagc |
56562717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 64 - 172
Target Start/End: Original strand, 11352704 - 11352812
Alignment:
| Q |
64 |
agtagcatgttgatccattgagcttgacatgttgtcatggaagctgcaatgtactcaacctcacaagaacaaagtgcaaccactgattccttcttagaac |
163 |
Q |
| |
|
|||| |||||| ||||||||| ||||||| | || ||| |||||| ||||||||||| | ||||||||| | | |||||||| ||||||||| || |||| |
|
|
| T |
11352704 |
agtaacatgttaatccattgaacttgacaagctgccatagaagctacaatgtactcagcttcacaagaagataatgcaaccattgattccttatttgaac |
11352803 |
T |
|
| Q |
164 |
tccatgaaa |
172 |
Q |
| |
|
||||||||| |
|
|
| T |
11352804 |
tccatgaaa |
11352812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 123; Significance: 2e-63; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 5989107 - 5988905
Alignment:
| Q |
1 |
atagctgacttgctatcaattctgagctccatcttctcatccttcaccagttgcaattccataagtagcatgttgatccattgagcttgacatgttgtca |
100 |
Q |
| |
|
||||| || ||||||||||||||||||||| | |||||||||||||||| ||| |||||||| ||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
5989107 |
atagcagatttgctatcaattctgagctccgtattctcatccttcaccaattgtaattccatcagtagcatgttgatccattgagcttgacatgctgtca |
5989008 |
T |
|
| Q |
101 |
tggaagctgcaatgtactcaacctcacaagaacaaagtgcaaccactgattccttcttagaactccatgaaaaaattgcatttccaatcatgaacacata |
200 |
Q |
| |
|
| ||||||||||||||||| ||||||| ||| | | |||||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
5989007 |
tagaagctgcaatgtactctgcctcacaggaagataatgcaactactgcttccttcttagaactccatgaaaaggctgcatttccaatcatgaacacata |
5988908 |
T |
|
| Q |
201 |
agc |
203 |
Q |
| |
|
||| |
|
|
| T |
5988907 |
agc |
5988905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 45486226 - 45486428
Alignment:
| Q |
1 |
atagctgacttgctatcaattctgagctccatcttctcatccttcaccagttgcaattccataagtagcatgttgatccattgagcttgacatgttgtca |
100 |
Q |
| |
|
||||| || ||| ||||||||||||| |||||||||||||||||||||| |||||||||||| |||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
45486226 |
atagcagatttgttatcaattctgagttccatcttctcatccttcaccaattgcaattccatcagtaatatgttgatccattgagcttgacatgctgtca |
45486325 |
T |
|
| Q |
101 |
tggaagctgcaatgtactcaacctcacaagaacaaagtgcaaccactgattccttcttagaactccatgaaaaaattgcatttccaatcatgaacacata |
200 |
Q |
| |
|
||||||||||||||||||| | ||||| ||| | | |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
45486326 |
tggaagctgcaatgtactctgcttcacaggaagataatgcaactactgattccttcttagaactccatgaaaaggctgcatttccaatcatgaacacata |
45486425 |
T |
|
| Q |
201 |
agc |
203 |
Q |
| |
|
||| |
|
|
| T |
45486426 |
agc |
45486428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 64 - 132
Target Start/End: Complemental strand, 17342580 - 17342512
Alignment:
| Q |
64 |
agtagcatgttgatccattgagcttgacatgttgtcatggaagctgcaatgtactcaacctcacaagaa |
132 |
Q |
| |
|
||||||||||||||||||| ||||||||| | || ||| |||||||||||||| ||| | ||||||||| |
|
|
| T |
17342580 |
agtagcatgttgatccattaagcttgacaggctgccatagaagctgcaatgtattcagcttcacaagaa |
17342512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University