View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12529_low_11 (Length: 225)
Name: NF12529_low_11
Description: NF12529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12529_low_11 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 2 - 225
Target Start/End: Original strand, 46367009 - 46367232
Alignment:
| Q |
2 |
cagtttggtaagaaagtgggttatcactacagaatgcgagcttagcagttgacaaatacaagactcccatgacaggtccaggagagggggagaggtagca |
101 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
46367009 |
cagtttggtaagaaagtgggttatcgctacagaatgcgagcttagcagttgacaaatacaagactcccatgacaggtccagcagaggtggagaggtagca |
46367108 |
T |
|
| Q |
102 |
tgcatatgttttaagaagttgttcctccggtacggtctcaaaagtttgtctaaagatcttctcataaccaccgtctgccagaactgttgttccctgagaa |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| | |
|
|
| T |
46367109 |
tgcatatgttttaagaagttgttcctccggtacagtctcaaaagtttgtctaaagatcttctcataaccaccttctgccagaacttttgttccctgagca |
46367208 |
T |
|
| Q |
202 |
atccttactacagcagcatcagca |
225 |
Q |
| |
|
|||||| ||||||||||||||||| |
|
|
| T |
46367209 |
atccttcctacagcagcatcagca |
46367232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University