View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12529_low_2 (Length: 345)
Name: NF12529_low_2
Description: NF12529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12529_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 36 - 335
Target Start/End: Complemental strand, 27480921 - 27480623
Alignment:
| Q |
36 |
atatataaaataacagagaactagtagatggtttggtacactcctatctcaaatggttagtatttgaaccacatatatttcttttcattatgttgttttg |
135 |
Q |
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| T |
27480921 |
atataaaaaataaaagagaactagtagatggtttg-tactctcctatctcaaatggttagtatttgaaccttaataatttcttttcattatgttgttttg |
27480823 |
T |
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| Q |
136 |
tttgaagtgtannnnnnnnnnnnngttagatgcagatgaataggcggttttatatgttgaaatggtttcaggagaagcatgccactcctgttttaataaa |
235 |
Q |
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||||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27480822 |
tttgaagtgtattttttcttttttgttagatgcagatgaagaggcggttttatatgctgaaatggtttcaggagaagcatgccactcctgttttaataaa |
27480723 |
T |
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| Q |
236 |
ttctaaggtatttttatcacgcaatgtgtgttttatttatgtatcaggttgtctctaagactatcagattttctatttctgcatttgttaagcttctctg |
335 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27480722 |
ttctaaggtatttttatcacgcaatgtgtgttttatttatgtatcaggttgtctctaagactatcagattttctatttctgcatttgttaagcttctctg |
27480623 |
T |
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