View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12529_low_4 (Length: 328)
Name: NF12529_low_4
Description: NF12529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12529_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 271; Significance: 1e-151; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 4 - 314
Target Start/End: Complemental strand, 13261079 - 13260769
Alignment:
| Q |
4 |
ggagaagcagagatagtgagtgataaatccttgtatagtgtgaacattttagatgtttcttccaaggaatccagtggccattcggttgaacaagttcaaa |
103 |
Q |
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| T |
13261079 |
ggagaagctgagatagtgagtgataaatccttgtatagtgtgaattctttagatgtttcttccaaggaatccagtggccgttcggttgaacaagttcaaa |
13260980 |
T |
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| Q |
104 |
atttggatgataataatggtgctatggacgaacctggtgcaatgtgccttgatgcatcgacatgtgtggaaaataccgacgagaacactaatgtggctgt |
203 |
Q |
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| T |
13260979 |
atttggatgataacaatggtgctatggacgaacctgctgcaatgtgccttgatgcatcgacatgtgtggaaaataccgacgagaacactaatgtggctgt |
13260880 |
T |
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| Q |
204 |
tcaagacactctagatgaggttcattcatctagttttgaagattctgatggggcaccagttctagttctgcctactgatcctaatgaagtagagacgagt |
303 |
Q |
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| T |
13260879 |
tcaagacactctagatgaggttcattcatctagttttgaagattctgatggggcaccagttcaagttctgcctattgatcctaatgaagtagagacgagt |
13260780 |
T |
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| Q |
304 |
aatcttgatgt |
314 |
Q |
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| T |
13260779 |
aatctcgatgt |
13260769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 87 - 308
Target Start/End: Complemental strand, 13270043 - 13269819
Alignment:
| Q |
87 |
ggttgaacaagttcaaaatttggatgataataatggtgctatggacgaacctggtgcaatgtgccttgatgcatcgacatgtgtggaaaataccgacgag |
186 |
Q |
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| T |
13270043 |
ggttgaacacgttcccaatttggattataataattgtgttcaagttgaagctgctgcaatgtgctttgatgtgtccacatgtgcgaaaaatactgatgag |
13269944 |
T |
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| Q |
187 |
aacactaatgtggctgttcaagacactctagatgaggttcattcatctagttttgaagattctgatggggcaccagttctagttctgcctactgatc--- |
283 |
Q |
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| T |
13269943 |
aacaccgatgtgcctgttgaagataatctagatgaggtttgttcgtgtagttttgatgattcagatgggacagcacttcaagttctgcctactgatccaa |
13269844 |
T |
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| Q |
284 |
ctaatgaagtagagacgagtaatct |
308 |
Q |
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| T |
13269843 |
ccaatgaagtagagactagtgatct |
13269819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 262
Target Start/End: Complemental strand, 13269471 - 13269382
Alignment:
| Q |
173 |
aaaataccgacgagaacactaatgtggctgttcaagacactctagatgaggttcattcatctagttttgaagattctgatggggcaccag |
262 |
Q |
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| T |
13269471 |
aaaatactgatgagaacacagatgtggcttttgaagatattctacatgaggttcttttatctaactttgaagattcagatgggacaccag |
13269382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 120
Target Start/End: Complemental strand, 13259891 - 13259827
Alignment:
| Q |
56 |
atgtttcttccaaggaatccagtggccattcggttgaacaagttcaaaatttggatgataataat |
120 |
Q |
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| T |
13259891 |
atgtttctccaaaggaatcaagtggctgtttggttgaacaacttcacaaattggatgataataat |
13259827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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