View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12529_low_6 (Length: 297)
Name: NF12529_low_6
Description: NF12529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12529_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 18 - 283
Target Start/End: Complemental strand, 51230801 - 51230539
Alignment:
| Q |
18 |
ctaataagtgttccacagttaagccactcaaaacaagaagctgaatctgcgccgccacaacaagaaaagcacttattattcacaaaatcatggtcgggtg |
117 |
Q |
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| T |
51230801 |
ctaataagtgttccacagttaagccactcaaaacaagaagctgaatctgcgccgccacaacaagaaaagcacttattattcacaaaatcatggtcgggtg |
51230702 |
T |
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| Q |
118 |
gaatggacataggttgaagataagccaaagcagcttgtttgagaagagggtttttgattgggatattctcattccagcttccattaagagatgattgtgg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51230701 |
gaatggacataggttgaagataagccaaagcagcttgtttgagaagagggtttttgattgggatattctcattccagcttccattaagagatgattgt-- |
51230604 |
T |
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| Q |
218 |
cggcaatgatatcatcatgtccctcaaactcgtatacgacgttgttggaacaatcgcatctacctc |
283 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51230603 |
-ggcaatgatatcatcatgtccctcaaactcgtatacgacgttgttggaacaatcgcatctacctc |
51230539 |
T |
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