View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12529_low_7 (Length: 294)
Name: NF12529_low_7
Description: NF12529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12529_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 18 - 285
Target Start/End: Original strand, 43439121 - 43439388
Alignment:
| Q |
18 |
tgatcaaaactatgcaacaacaagacctttatcaattacagatattttgcatgaaaatcgtttactccttcaaaatccttcagctgaaggtacaagtttt |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
43439121 |
tgatcaaaactatgcaacaacaagacctttatcaattacagatattttgcatgaaaatcgtttactccttcaaaatcctgcagctgaaggtacaagtttt |
43439220 |
T |
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| Q |
118 |
agtcacccctttagcaatgatcaacagtttctattaaaccaaaatgctgttattatggacaacaaacaactcattgaacttccacagttagatagtccaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||| || || |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43439221 |
agtcacccctttagcaatgatcaacagtttctatcaaaccaaaatactcttgttatggacaacaaacaactcattgaacttccacagttagatagtccaa |
43439320 |
T |
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| Q |
218 |
caacaagttttgcaatcaaagaaaatactcatcacaatggactcacaattgaagaatattgcagtgaa |
285 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43439321 |
caacaagttttgcaatcaaagaaaatactcatcacaatggactcacaattgaagaatattgcagtgaa |
43439388 |
T |
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