View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12529_low_8 (Length: 293)

Name: NF12529_low_8
Description: NF12529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12529_low_8
NF12529_low_8
[»] chr5 (8 HSPs)
chr5 (10-265)||(21371431-21371690)
chr5 (152-278)||(9833226-9833351)
chr5 (150-256)||(21370215-21370319)
chr5 (152-274)||(9833805-9833926)
chr5 (160-278)||(6531182-6531299)
chr5 (198-278)||(20546812-20546892)
chr5 (154-274)||(21745965-21746084)
chr5 (199-251)||(6532987-6533039)
[»] chr7 (6 HSPs)
chr7 (160-278)||(43574887-43575005)
chr7 (179-274)||(35543179-35543274)
chr7 (206-278)||(35541893-35541965)
chr7 (179-274)||(38129995-38130090)
chr7 (179-278)||(9417976-9418076)
chr7 (233-278)||(43576057-43576102)
[»] chr4 (4 HSPs)
chr4 (150-278)||(52757482-52757612)
chr4 (150-264)||(52758995-52759109)
chr4 (179-278)||(33690639-33690738)
chr4 (160-274)||(26935536-26935649)
[»] chr2 (3 HSPs)
chr2 (179-278)||(43700462-43700561)
chr2 (150-229)||(3669461-3669539)
chr2 (234-278)||(3669385-3669429)
[»] chr6 (6 HSPs)
chr6 (201-278)||(22914516-22914593)
chr6 (202-278)||(22899483-22899559)
chr6 (179-278)||(21540517-21540616)
chr6 (223-278)||(22880762-22880817)
chr6 (223-278)||(22898697-22898752)
chr6 (218-278)||(22881564-22881624)
[»] chr1 (2 HSPs)
chr1 (179-278)||(9553718-9553817)
chr1 (238-278)||(7163164-7163204)
[»] chr8 (1 HSPs)
chr8 (236-278)||(38364824-38364866)
[»] chr3 (3 HSPs)
chr3 (198-278)||(20406495-20406573)
chr3 (181-272)||(25707243-25707334)
chr3 (202-274)||(20405389-20405461)


Alignment Details
Target: chr5 (Bit Score: 88; Significance: 2e-42; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 10 - 265
Target Start/End: Original strand, 21371431 - 21371690
Alignment:
Q  10 cgttggaagaagaagtaaggga--tatnnnnnnngtaggattttttatcttaataatgataacacccttatctaaaaaatattgttgt--ttgatcaacg 105  Q
    ||||||||||||||||||||||  |||       || ||||||||||| ||||||||||| |||||||| ||||||||||||||||||  ||||||||      
T  21371431 cgttggaagaagaagtaagggacatataaaaaaagtgggattttttattttaataatgatgacacccttgtctaaaaaatattgttgtatttgatcaata 21371530  T
Q  106 gataattttccttgcatttgatgtagtatgaagttnnnnnnnnn-tagaatgatcaatatgatagagaaaaagaatcatttttcaagaacaaaataatta 204  Q
    || |||||| || ||||||| | |||||| |||||          ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||    
T  21371531 gacaatttttct-gcatttgttatagtat-aagttataaaaaaaatagaatgattaatatgatagagaaaaagaatcatttttcaagtacaaaataatta 21371628  T
Q  205 atatgataatttatgttg-aaaaaagaggtatatttattacaccttattctatgcaatgttg 265  Q
    |||| ||| | ||| ||| |||||||||||||||||||| |||||||| |||||||||||||    
T  21371629 atataatagtctatattgaaaaaaagaggtatatttattgcaccttatcctatgcaatgttg 21371690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 152 - 278
Target Start/End: Complemental strand, 9833351 - 9833226
Alignment:
Q  152 gaatgatcaatatgatagagaaaaagaatcatttttcaagaacaaaataattaatatgataatttatgttgaaaaaagaggtatatttattacaccttat 251  Q
    ||||||| ||||||||||||||||  | |||||||||||||| ||  |||||||||||||| ||| ||||||||||||||||| ||||||| ||||| ||    
T  9833351 gaatgattaatatgatagagaaaatta-tcatttttcaagaaaaagctaattaatatgatagtttttgttgaaaaaagaggtacatttattccacctcat 9833253  T
Q  252 tctatgcaatgttgcataggttagaaa 278  Q
     ||||||||||||||||||||||||||    
T  9833252 cctatgcaatgttgcataggttagaaa 9833226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 150 - 256
Target Start/End: Complemental strand, 21370319 - 21370215
Alignment:
Q  150 tagaatgatcaatatgatagagaaaaagaatcatttttcaagaacaaaataattaatatgataatttatgttgaaaaaagaggtatatttattacacctt 249  Q
    ||||||||| |||| ||||||||||  |||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||| ||||||| ||||||    
T  21370319 tagaatgattaataagatagagaaa--gaatcatttttcaaaaacaaaataattaatatgaaagtttatgttgaaaaaagaggtacatttattgcacctt 21370222  T
Q  250 attctat 256  Q
    || ||||    
T  21370221 atcctat 21370215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 152 - 274
Target Start/End: Original strand, 9833805 - 9833926
Alignment:
Q  152 gaatgatcaatatgatagagaaaaagaatcatttttcaagaacaaaataattaatatgataatttatgttgaaaaaagaggtatatttattacaccttat 251  Q
    ||||||| ||||||||||||||||  | | |||||| ||||| |  ||||||||||||||||||| |||||||||||| |||||||||||| ||||||||    
T  9833805 gaatgattaatatgatagagaaaacta-taattttttaagaaaaggataattaatatgataatttttgttgaaaaaaggggtatatttattgcaccttat 9833903  T
Q  252 tctatgcaatgttgcataggtta 274  Q
     ||||||||| ||| ||||||||    
T  9833904 cctatgcaatattgtataggtta 9833926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 160 - 278
Target Start/End: Complemental strand, 6531299 - 6531182
Alignment:
Q  160 aatatgatagagaaaaagaatcatttttcaagaacaaaataattaatatgataatttatgttgaaaaaagaggtatatttattacaccttattctatgca 259  Q
    ||||||||||||||||  |  |||||||||| || |  ||||||||||||||| ||| ||||||||||||||||||||| ||| |||  ||| |||||||    
T  6531299 aatatgatagagaaaattac-catttttcaaaaaaatgataattaatatgatagtttttgttgaaaaaagaggtatattcattgcactctatcctatgca 6531201  T
Q  260 atgttgcataggttagaaa 278  Q
    |||||||||||||||||||    
T  6531200 atgttgcataggttagaaa 6531182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 198 - 278
Target Start/End: Complemental strand, 20546892 - 20546812
Alignment:
Q  198 ataattaatatgataatttatgttgaaaaaagaggtatatttattacaccttattctatgcaatgttgcataggttagaaa 278  Q
    ||||||||||||||  |||||  |||| | || |||| ||||||| |||||||| ||||||||||||||||||||||||||    
T  20546892 ataattaatatgatggtttattatgaatatagtggtacatttattgcaccttatcctatgcaatgttgcataggttagaaa 20546812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 154 - 274
Target Start/End: Original strand, 21745965 - 21746084
Alignment:
Q  154 atgatcaatatgatagagaaaaagaatcatttttcaagaacaaaataattaatatgataatttatgttgaaaaaagaggtatatttattacaccttattc 253  Q
    ||||| |||| |||||||||||  || ||||||||||||| | || ||| ||||||||| |||| |||||| | || || | |||||||  |||||||      
T  21745965 atgattaataggatagagaaaattaa-catttttcaagaaaataagaatcaatatgatagtttaggttgaagatagtggaacatttattgtaccttatca 21746063  T
Q  254 tatgcaatgttgcataggtta 274  Q
    |||||||||||||||||||||    
T  21746064 tatgcaatgttgcataggtta 21746084  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 251
Target Start/End: Original strand, 6532987 - 6533039
Alignment:
Q  199 taattaatatgataatttatgttgaaaaaagaggtatatttattacaccttat 251  Q
    |||||||||||||| ||| ||||||||||||||||  ||||||| || |||||    
T  6532987 taattaatatgatagtttttgttgaaaaaagaggtccatttattgcatcttat 6533039  T

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Target: chr7 (Bit Score: 59; Significance: 5e-25; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 160 - 278
Target Start/End: Complemental strand, 43575005 - 43574887
Alignment:
Q  160 aatatgatagagaaaaagaatcatttttcaagaacaaaataattaatatgataatttatgttgaaaaaagaggtatatttattacaccttattctatgca 259  Q
    |||| |||||||||||| ||||||||||||| || |  || |||||| ||||| ||| || ||||||||| |||| ||||||| |||||||| |||||||    
T  43575005 aataggatagagaaaaaaaatcatttttcaaaaaaaggatgattaatgtgatactttttggtgaaaaaagtggtacatttattgcaccttatcctatgca 43574906  T
Q  260 atgttgcataggttagaaa 278  Q
    |||||||||||||||||||    
T  43574905 atgttgcataggttagaaa 43574887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 179 - 274
Target Start/End: Original strand, 35543179 - 35543274
Alignment:
Q  179 atcatttttcaagaacaaaataattaatatgataatttatgttgaaaaaagaggtatatttattacaccttattctatgcaatgttgcataggtta 274  Q
    ||||||||||||||| |  ||||||||||||||||||| ||||||||||||||||||||||||| || ||||| |||| ||| ||||| |||||||    
T  35543179 atcatttttcaagaaaaggataattaatatgataatttttgttgaaaaaagaggtatatttattgcatcttatcctatccaaagttgcctaggtta 35543274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 206 - 278
Target Start/End: Complemental strand, 35541965 - 35541893
Alignment:
Q  206 tatgataatttatgttgaaaaaagaggtatatttattacaccttattctatgcaatgttgcataggttagaaa 278  Q
    ||||||||||| |||||||| |||||||| |||||||||||||||| ||||||||||||||||| ||||||||    
T  35541965 tatgataatttttgttgaaacaagaggtaaatttattacaccttatcctatgcaatgttgcatacgttagaaa 35541893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 179 - 274
Target Start/End: Original strand, 38129995 - 38130090
Alignment:
Q  179 atcatttttcaagaacaaaataattaatatgataatttatgttgaaaaaagaggtatatttattacaccttattctatgcaatgttgcataggtta 274  Q
    ||||||||||||||| | |||||||||||||||| | | |||||||||||| |||| ||||||| |||||||| ||||||||| ||| ||||||||    
T  38129995 atcatttttcaagaaaataataattaatatgatagtctttgttgaaaaaagtggtacatttattgcaccttatcctatgcaatattgtataggtta 38130090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 179 - 278
Target Start/End: Original strand, 9417976 - 9418076
Alignment:
Q  179 atcatttttcaagaacaaaataattaatatgataatttatgttgaaaaaaga-ggtatatttattacaccttattctatgcaatgttgcataggttagaa 277  Q
    ||||||||||||||| || |||||||||| |||| ||| |  |||||||| | |||| ||||| | |||||||| |||||||||||||||||||||||||    
T  9417976 atcatttttcaagaaaaagataattaatacgatagtttttagtgaaaaaaaatggtacatttaatgcaccttatcctatgcaatgttgcataggttagaa 9418075  T
Q  278 a 278  Q
    |    
T  9418076 a 9418076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 233 - 278
Target Start/End: Original strand, 43576057 - 43576102
Alignment:
Q  233 tatatttattacaccttattctatgcaatgttgcataggttagaaa 278  Q
    |||||||||| |||||||||||||  ||||||||||||||||||||    
T  43576057 tatatttattgcaccttattctatataatgttgcataggttagaaa 43576102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 5e-25; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 150 - 278
Target Start/End: Complemental strand, 52757612 - 52757482
Alignment:
Q  150 tagaatgatcaatatgatagagaaaaagaa-tcatttttcaagaacaaaataattaatatgataatttatgttgaaaaaaga-ggtatatttattacacc 247  Q
    |||||||||  ||| |||||||||||| || |||||||||||||| | |||||||||||| ||| ||||||| ||||||| | |||| ||||||| ||||    
T  52757612 tagaatgatttataggatagagaaaaaaaaatcatttttcaagaaaagaataattaatatcatagtttatgtagaaaaaacatggtacatttattgcacc 52757513  T
Q  248 ttattctatgcaatgttgcataggttagaaa 278  Q
    |||| ||||||||| ||||||||||||||||    
T  52757512 ttatcctatgcaatattgcataggttagaaa 52757482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 150 - 264
Target Start/End: Original strand, 52758995 - 52759109
Alignment:
Q  150 tagaatgatcaatatgatagagaaaaagaatcatttttcaagaacaaaataattaatatgataatttatgttgaaaaaagaggtatatttattacacctt 249  Q
    |||||||||  ||| |||||||||||| |||||||||||||||| |  ||||||||||| ||| ||||| | ||||||   || ||||||||| ||||||    
T  52758995 tagaatgatttataggatagagaaaaaaaatcatttttcaagaaaaggataattaatatcatagtttatatagaaaaatatggaatatttattgcacctt 52759094  T
Q  250 attctatgcaatgtt 264  Q
    || ||||||||||||    
T  52759095 atcctatgcaatgtt 52759109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 179 - 278
Target Start/End: Complemental strand, 33690738 - 33690639
Alignment:
Q  179 atcatttttcaagaacaaaataattaatatgataatttatgttgaaaaaagaggtatatttattacaccttattctatgcaatgttgcataggttagaaa 278  Q
    ||||||||||||||| |  | ||| ||||||||||||||||||||||| || || | ||||  | ||| |||||||||||||  ||||||||||||||||    
T  33690738 atcatttttcaagaaaagtaaaatcaatatgataatttatgttgaaaatagtgggacattttatgcactttattctatgcaactttgcataggttagaaa 33690639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 160 - 274
Target Start/End: Complemental strand, 26935649 - 26935536
Alignment:
Q  160 aatatgatagaga-aaaagaatcatttttcaagaacaaaataattaatatgataatttatgttgaaaaaagaggtatatttattacaccttattctatgc 258  Q
    ||||||| ||||| |||| ||||||||| |||||| || | |||||||| || || |||||||||  |||| ||| |||||||| |||||||  || |||    
T  26935649 aatatgagagagagaaaataatcatttt-caagaa-aatacaattaataagacaacttatgttgattaaagtggtgtatttattgcaccttaagctttgc 26935552  T
Q  259 aatgttgcataggtta 274  Q
    ||||||||||||||||    
T  26935551 aatgttgcataggtta 26935536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 179 - 278
Target Start/End: Original strand, 43700462 - 43700561
Alignment:
Q  179 atcatttttcaagaacaaaataattaatatgataatttatgttgaaaaaagaggtatatttattacaccttattctatgcaatgttgcataggttagaaa 278  Q
    ||||||||||||||| || ||||| ||||||||||||||||||| ||| || || | ||||||| |||||||| ||||||||| ||||||||||||||||    
T  43700462 atcatttttcaagaaaaatataatcaatatgataatttatgttggaaatagtggaacatttattgcaccttatcctatgcaatattgcataggttagaaa 43700561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 150 - 229
Target Start/End: Complemental strand, 3669539 - 3669461
Alignment:
Q  150 tagaatgatcaatatgatagagaaaaagaatcatttttcaagaacaaaataattaatatgataatttatgttgaaaaaag 229  Q
    ||||||| | |||| |||||||||| | || || |||||||||| || ||||||||||||||||||||| ||||||||||    
T  3669539 tagaatggttaataggatagagaaaga-aaccacttttcaagaaaaacataattaatatgataatttattttgaaaaaag 3669461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 278
Target Start/End: Complemental strand, 3669429 - 3669385
Alignment:
Q  234 atatttattacaccttattctatgcaatgttgcataggttagaaa 278  Q
    |||||||| | ||||||| ||||||||||||||||| ||||||||    
T  3669429 atatttatgataccttatcctatgcaatgttgcataagttagaaa 3669385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 5e-22; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 201 - 278
Target Start/End: Original strand, 22914516 - 22914593
Alignment:
Q  201 attaatatgataatttatgttgaaaaaagaggtatatttattacaccttattctatgcaatgttgcataggttagaaa 278  Q
    |||||||||||| | | ||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||    
T  22914516 attaatatgatagtctttgttgaaaaaagaggtacatttattgcaccttatcctatgcaatgttgcataggttagaaa 22914593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 202 - 278
Target Start/End: Original strand, 22899483 - 22899559
Alignment:
Q  202 ttaatatgataatttatgttgaaaaaagaggtatatttattacaccttattctatgcaatgttgcataggttagaaa 278  Q
    ||||||||||| | | ||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||    
T  22899483 ttaatatgatagtctttgttgaaaaaagaggtacatttattgcaccttatcctatgcaatgttgcataggttagaaa 22899559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 179 - 278
Target Start/End: Original strand, 21540517 - 21540616
Alignment:
Q  179 atcatttttcaagaacaaaataattaatatgataatttatgttgaaaaaagaggtatatttattacaccttattctatgcaatgttgcataggttagaaa 278  Q
    ||||||||||||||| |  ||||||||| ||||| ||| ||||||||||||||||| ||||||||||||||||  ||||  ||||| |||||||||||||    
T  21540517 atcatttttcaagaaaatgataattaatttgatagtttttgttgaaaaaagaggtacatttattacaccttatcttatgtcatgttacataggttagaaa 21540616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 223 - 278
Target Start/End: Complemental strand, 22880817 - 22880762
Alignment:
Q  223 aaaaaagaggtatatttattacaccttattctatgcaatgttgcataggttagaaa 278  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  22880817 aaaaaagaggtacatttattacaccttattctatgcaatgttgcataggttagaaa 22880762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 223 - 278
Target Start/End: Complemental strand, 22898752 - 22898697
Alignment:
Q  223 aaaaaagaggtatatttattacaccttattctatgcaatgttgcataggttagaaa 278  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  22898752 aaaaaagaggtacatttattacaccttattctatgcaatgttgcataggttagaaa 22898697  T

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Target: chr6; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 218 - 278
Target Start/End: Original strand, 22881564 - 22881624
Alignment:
Q  218 tgttgaaaaaagaggtatatttattacaccttattctatgcaatgttgcataggttagaaa 278  Q
    ||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||    
T  22881564 tgttgaaaaaagaggtacatttattgcaccttatcctatgcaatgttgcataggttagaaa 22881624  T

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Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 179 - 278
Target Start/End: Original strand, 9553718 - 9553817
Alignment:
Q  179 atcatttttcaagaacaaaataattaatatgataatttatgttgaaaaaagaggtatatttattacaccttattctatgcaatgttgcataggttagaaa 278  Q
    ||||||||||||||| |||||||| |||||||||||||||||| |||| || |  | ||||||| |  ||||| |||| |||||||||||||||||||||    
T  9553718 atcatttttcaagaaaaaaataatcaatatgataatttatgttaaaaatagtgagacatttattgcttcttatcctattcaatgttgcataggttagaaa 9553817  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 278
Target Start/End: Original strand, 7163164 - 7163204
Alignment:
Q  238 ttattacaccttattctatgcaatgttgcataggttagaaa 278  Q
    ||||| || |||||||||||||||||||| |||||||||||    
T  7163164 ttattgcatcttattctatgcaatgttgcgtaggttagaaa 7163204  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 236 - 278
Target Start/End: Complemental strand, 38364866 - 38364824
Alignment:
Q  236 atttattacaccttattctatgcaatgttgcataggttagaaa 278  Q
    ||||||| |||||||||||||||||||||||||||||||||||    
T  38364866 atttattgcaccttattctatgcaatgttgcataggttagaaa 38364824  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 198 - 278
Target Start/End: Original strand, 20406495 - 20406573
Alignment:
Q  198 ataattaatatgataatttatgttgaaaaaagaggtatatttattacaccttattctatgcaatgttgcataggttagaaa 278  Q
    ||||||||||||||| ||| |||||||||||  | || ||||||| ||||| || ||||||||||||||||||||||||||    
T  20406495 ataattaatatgatagtttttgttgaaaaaat-gatacatttattgcacct-atcctatgcaatgttgcataggttagaaa 20406573  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 181 - 272
Target Start/End: Original strand, 25707243 - 25707334
Alignment:
Q  181 catttttcaagaacaaaataattaatatgataatttatgttgaaaaaagaggtatatttattacaccttattctatgcaatgttgcataggt 272  Q
    ||||||||||||| |  ||||||||||| ||| ||| |||| ||||||  |||| |||||||  || |||| ||||||||||||||||||||    
T  25707243 catttttcaagaaaatgataattaatataatagtttttgttaaaaaaaatggtacatttattgtactttatcctatgcaatgttgcataggt 25707334  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 274
Target Start/End: Complemental strand, 20405461 - 20405389
Alignment:
Q  202 ttaatatgataatttatgttgaaaaaagaggtatatttattacaccttattctatgcaatgttgcataggtta 274  Q
    ||||||||||| ||| |||||||||||  |||| ||||||| ||||||||  || | ||||||||||||||||    
T  20405461 ttaatatgatagtttttgttgaaaaaaatggtacatttattgcaccttatcttaagtaatgttgcataggtta 20405389  T

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