View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1252_high_18 (Length: 262)
Name: NF1252_high_18
Description: NF1252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1252_high_18 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 13966929 - 13967162
Alignment:
| Q |
1 |
ttcttgctggtggaaatgttaaaactaatgctgttgtggctcaagatgggagtggacagtttaagacattaactgatgctcttaagactgttcctcctac |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13966929 |
ttcttgctggtggaaatgttaaagctaatgctgttgtggctcaagatgggagtggacagtttaagacattaactgatgctcttaagactgttcctcctac |
13967028 |
T |
|
| Q |
101 |
aaatgcagcaccttttgtgatctatgttaaggctggtgtatataaagagactgttaatgttgctaaggaaatgaattatgttactgtcattggcgatggt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13967029 |
aaatgcagcaccttttgtgatctatgttaaggctggtgtatataaagagactgttaatgttgctaaggaaatgaattatgttactgtcattggcgatggt |
13967128 |
T |
|
| Q |
201 |
cctaccaagaccaaattcactggtagcctcaact |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
13967129 |
cctaccaagaccaaattcactggtagcctcaact |
13967162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 13977097 - 13977330
Alignment:
| Q |
1 |
ttcttgctggtggaaatgttaaaactaatgctgttgtggctcaagatgggagtggacagtttaagacattaactgatgctcttaagactgttcctcctac |
100 |
Q |
| |
|
||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13977097 |
ttcttgctggtggaaatgttaaagctgatgctgttgtggctcaagatgggagtggacagtttaagacattaactgatgctcttaagactgttcctcctca |
13977196 |
T |
|
| Q |
101 |
aaatgcagcaccttttgtgatctatgttaaggctggtgtatataaagagactgttaatgttgctaaggaaatgaattatgttactgtcattggcgatggt |
200 |
Q |
| |
|
|||||||| ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13977197 |
aaatgcagtaccttttgtgatccatgttaaggctggtgtttataaagagactgttaatgttgctaaggaaatgaattatgttactgtcattggcgatggt |
13977296 |
T |
|
| Q |
201 |
cctaccaagaccaaattcactggtagcctcaact |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
13977297 |
cctaccaagaccaaattcactggtagcctcaact |
13977330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 17 - 232
Target Start/End: Original strand, 13959374 - 13959589
Alignment:
| Q |
17 |
tgttaaaactaatgctgttgtggctcaagatgggagtggacagtttaagacattaactgatgctcttaagactgttcctcctacaaatgcagcacctttt |
116 |
Q |
| |
|
||||||| |||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| | | |||||| |||| |
|
|
| T |
13959374 |
tgttaaacctaatgttgttgtggctcaagatggaagtggacagtttaagacattaactgatgctattaagactgttcctgccaataatgcacagaatttt |
13959473 |
T |
|
| Q |
117 |
gtgatctatgttaaggctggtgtatataaagagactgttaatgttgctaaggaaatgaattatgttactgtcattggcgatggtcctaccaagaccaaat |
216 |
Q |
| |
|
||||| |||||||||| ||||| ||||| |||||||||||||| ||||||| ||| || |||||| ||||||| ||||||||| | |||||||||| |
|
|
| T |
13959474 |
gtgatttatgttaaggaaggtgtttataatgagactgttaatgtgcctaaggatatggcttttgttaccatcattggtgatggtcctgcaaagaccaaat |
13959573 |
T |
|
| Q |
217 |
tcactggtagcctcaa |
232 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
13959574 |
tcactggtagcctcaa |
13959589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University