View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1252_high_9 (Length: 370)
Name: NF1252_high_9
Description: NF1252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1252_high_9 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 317; Significance: 1e-179; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 370
Target Start/End: Complemental strand, 13966705 - 13966336
Alignment:
| Q |
1 |
atgagaaagtgtaccagttaaccaaactttgatatcaaaagcatattcacttaggttatggaaatcaaattggtccaatgtgccaacagatttatgaatt |
100 |
Q |
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| T |
13966705 |
atgagaaagtgtaccagttaaccaaaccttgatatcaaaagcatattcacttagcttatggaaatcaaattggtccaatgtaccaacagatttatgaatt |
13966606 |
T |
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| Q |
101 |
ccatcaacggcataatccaaaacttcatcgcaaatttccatcgcttgttttgtcatgctgtctgttgccaattcttgataaagtgctgaattgtttatgt |
200 |
Q |
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| T |
13966605 |
ccatcaacagcataatccaaaacttcattgcaaatttccatcgcttgttttgtcatgctgtctgttgccaattcttgataaagtgctgaattgtttatgt |
13966506 |
T |
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| Q |
201 |
gtttccgtaattcctctgctgttgcacccaaagctcctttgatacgatttttcatgttggtgaatgacgctttttcaagagttttgtgacatgtttcttt |
300 |
Q |
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| T |
13966505 |
gtttccgtaattcctcttctgttgcacccaaagctcctttgatacgatttttcatgttgctgaatgacgctttttcaagagttttgtgacatgtttcttt |
13966406 |
T |
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| Q |
301 |
gaattttattgattgacatagcatatcaacannnnnnngcgagttagagatatgtgctttttgttctcca |
370 |
Q |
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| T |
13966405 |
gaattttgttgattgacatagcatatcaacatttttttgcgagttagagatatgtgctttttgttctcca |
13966336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 331
Target Start/End: Complemental strand, 13976873 - 13976543
Alignment:
| Q |
1 |
atgagaaagtgtaccagttaaccaaactttgatatcaaaagcatattcacttaggttatggaaatcaaattggtccaatgtgccaacagatttatgaatt |
100 |
Q |
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| T |
13976873 |
atgagaaagtgtaccagttaaccaaaccttgatatcaaaagcatattcacttagcttatggaaatcaaattggtccaatgtaccaacagatttatgaatt |
13976774 |
T |
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| Q |
101 |
ccatcaacggcataatccaaaacttcatcgcaaatttccatcgcttgttttgtcatgctgtctgttgccaattcttgataaagtgctgaattgtttatgt |
200 |
Q |
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| T |
13976773 |
ccatcaacggcataatccaaaacttcgttgcaaatttccattgcttgttttgtcatgctgtcttttcccaattcttgataaagtgctgaattgtttatgt |
13976674 |
T |
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| Q |
201 |
gtttccgtaattcctctgctgttgcacccaaagctcctttgatacgatttttcatgttggtgaatgacgctttttcaagagttttgtgacatgtttcttt |
300 |
Q |
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| T |
13976673 |
gtttccgtaattcctctgctgttgcactgaaagctgctttgataagctctttcgtgtcggttgatgacgcgttttcaagacttttgtgacatgtttcttt |
13976574 |
T |
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| Q |
301 |
gaattttattgattgacatagcatatcaaca |
331 |
Q |
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| T |
13976573 |
gtattctgttgattgacatagcatatcaaca |
13976543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 13959155 - 13958912
Alignment:
| Q |
1 |
atgagaaagtgtaccagttaaccaaactttgatatcaaaagcatattcacttaggttatggaaatcaaattggtccaatgtgccaacagatttatgaatt |
100 |
Q |
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||||||||||||||| |||||||||||||||| |||| ||| ||||||| || |||| | |||||||| |||| || |||||||||||||||||| |
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| T |
13959155 |
atgagaaagtgtaccggttaaccaaactttgagatcataagaatattcatgtatcttattaatatcaaatttatccactgcaccaacagatttatgaatt |
13959056 |
T |
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| Q |
101 |
ccatcaacggcataatccaaaacttcatcgcaaatttccatcgcttgttttgtcatgctgtctgttgccaattcttgataaagtgctgaattgtttatgt |
200 |
Q |
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| T |
13959055 |
ccatcaacagcataatccaaaacttcattgcaaacttccattgcttgttttgtcatcttgtcttgtcctaattcttgaataagagatgaactgtttatgt |
13958956 |
T |
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| Q |
201 |
gtttccgtaattcctctgctgttgcacccaaagctcctttgata |
244 |
Q |
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| T |
13958955 |
gtttcaataactcctctgatgttgcactgaaagctgctttgata |
13958912 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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