View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1252_low_10 (Length: 407)
Name: NF1252_low_10
Description: NF1252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1252_low_10 |
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| [»] scaffold0122 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-109; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 92 - 396
Target Start/End: Complemental strand, 29724583 - 29724280
Alignment:
| Q |
92 |
agttagttgtctaatcaactgcacaaaagctgtacagatttgacatgacaggggtaaacccctcggtttcgccgtggcattttttctgcctatatattcc |
191 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
29724583 |
agttagttatctaatcaactgcacaaaagctgtacagatttgacatgacaggggtaaacccctcggttttgccgtggcattttttctgcctatatattcc |
29724484 |
T |
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| Q |
192 |
tctaccgtgtgcaacactaactatttgagacttagaaaaaatttactcctctatttcatctatacatactcttaaacaacaatacacttctctacttttg |
291 |
Q |
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||||||||||||| |||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29724483 |
tctaccgtgtgcattactagctgtttgagactaagaaaaaatttactcctctatttcatctatacatactcttaaacaacaatacacttctctacttttg |
29724384 |
T |
|
| Q |
292 |
gtaaatttctcttcacttattatannnnnnnnnnnnnnatattttactacttattaacatnnnnnnnttcatgttgccgtgttcaagttttttgcctcct |
391 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||| |||| ||||| |||||||||||||||||||||| |
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| T |
29724383 |
gtaaatttctcttcacttattata-tttttctgtttttatattttactacttattaacataaaaaaattcaagttgctgtgttcaagttttttgcctcct |
29724285 |
T |
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| Q |
392 |
cctat |
396 |
Q |
| |
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||||| |
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| T |
29724284 |
cctat |
29724280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0122 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: scaffold0122
Description:
Target: scaffold0122; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 90 - 397
Target Start/End: Complemental strand, 46732 - 46426
Alignment:
| Q |
90 |
gcagttagttgtctaatcaactgcacaaaagctgtacagatttgacatgacaggggtaaacccctcggtttcgccgtggcattttttctgcctatatatt |
189 |
Q |
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||||||||||||||| ||||||||||||||||||||||||| || ||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
46732 |
gcagttagttgtctagtcaactgcacaaaagctgtacagatctgccatgacaagggtaaacccctcggttttgccgtggcattttttctgcctatatatt |
46633 |
T |
|
| Q |
190 |
cctctaccgtgtgcaacactaactatttgagacttagaaaaaatttactcctctatttcatctatacatactcttaaacaacaatacacttctctacttt |
289 |
Q |
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||||||| ||||||| |||| || |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
46632 |
cctctactgtgtgcattactagctgtttgagacttagaaaaaatttactcctcaatttcatctatacatactcttaaacaacaatacacttctctacctt |
46533 |
T |
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| Q |
290 |
tggtaaatttctcttcacttattatannnnnnnnnnnnnnatattttactacttattaacatnnnnnnnttcatgttgccgtgttcaagttttttgcctc |
389 |
Q |
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|||||||||||||||||||||||||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
46532 |
tggtaaatttctcttcacttattata-tttttctgtttttatatttgactacttattaacataaaaaaattcatgttgccgtgttcaagttttttgcctc |
46434 |
T |
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| Q |
390 |
ctcctatg |
397 |
Q |
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|||||||| |
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| T |
46433 |
ctcctatg |
46426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 7e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 250 - 397
Target Start/End: Complemental strand, 19541029 - 19540883
Alignment:
| Q |
250 |
tctatacatactcttaaacaacaatacacttctctacttttggtaaatttctcttcacttattatannnnnnnnnnnnnnatattttactacttattaac |
349 |
Q |
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||||||||||| ||||| || |||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
19541029 |
tctatacatacacttaatcagcaatacacttctatacttttggtaaatttctcttcacttattata-tttttctgtttttatattttactacttattaac |
19540931 |
T |
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| Q |
350 |
atnnnnnnnttcatgttgccgtgttcaagttttttgcctcctcctatg |
397 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||| |
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| T |
19540930 |
ataaaaaaattcatgttgccgtgttcaagttttttgcctcctcctatg |
19540883 |
T |
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