View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1252_low_11 (Length: 370)
Name: NF1252_low_11
Description: NF1252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1252_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 150; Significance: 3e-79; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 152 - 332
Target Start/End: Complemental strand, 42751447 - 42751256
Alignment:
| Q |
152 |
atctataaattgtttaagtattgggtaaaatatttttaaaaagtaa-----------tcatgatacttctagtgtggtatctaggtacgtcgtacttttt |
240 |
Q |
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| T |
42751447 |
atctataaattgtttaagtattgggtaaaatatttttaaaaagtaaataaaaagtaatcatgatacttctagtgtggtatctagatacgtcgtacttttt |
42751348 |
T |
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| Q |
241 |
ggagtacatgagcttcatgatatgatcaagcatgtcattttatccttataagtcctctccactaaaataattttattcgggtgtatttatta |
332 |
Q |
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| T |
42751347 |
ggagtacatgagcttcatgatatgatcaagcatgtcattttatccttataagtcctctccactaaaataattttattcgggtgtatttatta |
42751256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 47 - 166
Target Start/End: Complemental strand, 42751582 - 42751463
Alignment:
| Q |
47 |
atagcaccatcttgagttgaatcatgcatatcttagttgaattctcacaactctgtttcaccttttttctaccgtttattttttctaagatacatattca |
146 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42751582 |
atagcaccatcttgagttgaatcatgcatatcttagttgaattctcacaactctgtttcaccttttttctaccgtttattttttctaagatacatattca |
42751483 |
T |
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| Q |
147 |
catgtatctataaattgttt |
166 |
Q |
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| T |
42751482 |
catgtatctataaattgttt |
42751463 |
T |
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