View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1252_low_13 (Length: 366)
Name: NF1252_low_13
Description: NF1252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1252_low_13 |
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| [»] chr8 (5 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 122; Significance: 2e-62; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 30 - 269
Target Start/End: Complemental strand, 36158688 - 36158453
Alignment:
| Q |
30 |
ctatctatagatcacagacaaggagagagt----gagagacattccttgtttttattcagttttactattattatacttatacttccattgtcattccgc |
125 |
Q |
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| T |
36158688 |
ctatctatagatcacagacagggagagactttgagagagacattctttgtttttattcagttttactattattatacttatacttccattgtcattccgc |
36158589 |
T |
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| Q |
126 |
atgccctttccannnnnnnnnnnnnnnnataaaatattgacttataattgtaggtttttgtttgacaaaaataaatgtaaatattactccnnnnnnnttt |
225 |
Q |
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| T |
36158588 |
atgccctttcca------tttttttttaataaaatattgacttataattgtaggtttttgtttgac--aaataaatgtacatattactccaaaaaaattt |
36158497 |
T |
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| Q |
226 |
gcatctatttattttagagcaaaatgaataaaagttgtattgtg |
269 |
Q |
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| T |
36158496 |
gcatctatttattttagaggaaaatgaataaaagttgtattgtg |
36158453 |
T |
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Target: chr8 (Bit Score: 73; Significance: 3e-33; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 294 - 366
Target Start/End: Complemental strand, 1566966 - 1566894
Alignment:
| Q |
294 |
tgtgtgagggtaaattaaagggattgagtagttcatacactgcatcagattctttcatctccacaaacccatc |
366 |
Q |
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| T |
1566966 |
tgtgtgagggtaaattaaagggattgagtagttcatacactgcatcagattctttcatctccacaaacccatc |
1566894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 294 - 366
Target Start/End: Original strand, 1456371 - 1456443
Alignment:
| Q |
294 |
tgtgtgagggtaaattaaagggattgagtagttcatacactgcatcagattctttcatctccacaaacccatc |
366 |
Q |
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| T |
1456371 |
tgtgtgagggtaaattaaagggattgagtagttcatacactgcatcagattctttcatctccacaaatccatc |
1456443 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 294 - 366
Target Start/End: Original strand, 1461449 - 1461521
Alignment:
| Q |
294 |
tgtgtgagggtaaattaaagggattgagtagttcatacactgcatcagattctttcatctccacaaacccatc |
366 |
Q |
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| T |
1461449 |
tgtgtgagggtaaattaaggggattgagtagttcatacactgcatcagattctttcatctccacaaacccatc |
1461521 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 294 - 366
Target Start/End: Complemental strand, 1555515 - 1555443
Alignment:
| Q |
294 |
tgtgtgagggtaaattaaagggattgagtagttcatacactgcatcagattctttcatctccacaaacccatc |
366 |
Q |
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| T |
1555515 |
tgtgtgagggtaaattaatgggattgagtagttcatacactgcatcagattctttcatctccacaaacccatc |
1555443 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 297 - 363
Target Start/End: Original strand, 1454721 - 1454787
Alignment:
| Q |
297 |
gtgagggtaaattaaagggattgagtagttcatacactgcatcagattctttcatctccacaaaccc |
363 |
Q |
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| T |
1454721 |
gtgacggtaaattaaagggattgagtattacatacactgcatcagattcttccatctccacaaaccc |
1454787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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