View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1252_low_14 (Length: 353)
Name: NF1252_low_14
Description: NF1252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1252_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 13 - 325
Target Start/End: Complemental strand, 48408304 - 48407988
Alignment:
| Q |
13 |
taggtccgcattatattcataaatttgaaacta----ttgttttattgaaaggctggatagaccatggttttggtctccagaagtgtaactcttgacgta |
108 |
Q |
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| T |
48408304 |
taggtccgcattatattcataaatttgaaactactccttgttttattgaaaggctggatagaccatggttttggtctccagaagtgtaactcttgacgta |
48408205 |
T |
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| Q |
109 |
agaatgtataaagctagatactatctgaggtgtaattttctcgattcaaattttgaacataatcatagttttgtttggagaagcatttataaatcaaaat |
208 |
Q |
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| T |
48408204 |
agaatgtataaagctagatactatctgaggtgtaattttctcgattcaaattttgaacataattctaattttgtttggagaagcatttgtaaatcaaaat |
48408105 |
T |
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| Q |
209 |
tcatcttaaaagccggaagtcggtggagcgtgggtgatggtaaatctatcccagttttgagtaataattgaatttttggtggacaccatatcaatccaca |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| |
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| T |
48408104 |
tcatcttaaaagccggaagtcggtggagcgtgggtgatggtaaatctatcccagttttgagtgataattgaatttttggtggacaccatatcattccaca |
48408005 |
T |
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| Q |
309 |
ccatgaaagtatgtttt |
325 |
Q |
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||||||| ||||||||| |
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| T |
48408004 |
ccatgaaggtatgtttt |
48407988 |
T |
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