View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1252_low_15 (Length: 346)
Name: NF1252_low_15
Description: NF1252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1252_low_15 |
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| [»] scaffold0415 (1 HSPs) |
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| [»] scaffold0559 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 179; Significance: 1e-96; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 73 - 259
Target Start/End: Complemental strand, 40812628 - 40812442
Alignment:
| Q |
73 |
taggcatataaataagctgttgatcaccacacttctttcaaaaatcaaaacatacaccaattaatagaagctcaatcctcttgaatatcacaatcataat |
172 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40812628 |
taggcatataaataagctgttgatcaccacacttctttcaaaaatcaaaacatacaccaattaatagaagctcaatcctcttgaatatcacaatcataat |
40812529 |
T |
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| Q |
173 |
agtaacaaaaaatggccaaggttcatccacatcaagaatccacatcctctgattgtctcatcagcaggtctaataaaagagaaacat |
259 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
40812528 |
agtaacaaaaaatggccaaagttcatccacatcaagaatccacatcctctgattctctcatcagcaggtctaataaaagagaaacat |
40812442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 127 - 214
Target Start/End: Complemental strand, 40805867 - 40805779
Alignment:
| Q |
127 |
caccaattaat-agaagctcaatcctcttgaatatcacaatcataatagtaacaaaaaatggccaaggttcatccacatcaagaatcca |
214 |
Q |
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| T |
40805867 |
caccaattaattagaagcttgatcctcttgaatatcacaatcataatagtaacaaaaaatggccaaagtttatccacatcaagaatcca |
40805779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 78 - 216
Target Start/End: Complemental strand, 40817798 - 40817659
Alignment:
| Q |
78 |
atataaataagctgttgatcaccacacttctttcaaaaatcaaaacatacaccaattaat-agaagctcaatcctcttgaatatcacaatcataatagta |
176 |
Q |
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||||||||||| || | ||||| | ||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||| ||||||| |
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| T |
40817798 |
atataaataagttgctaatcactcctcttctttcaaaaatcaaaacatacaacaattaattataagctcaatcctcttgaatatcacaatcacaatagta |
40817699 |
T |
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| Q |
177 |
acaaaaaatggccaaggttcatccacatcaagaatccaca |
216 |
Q |
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| ||| |||||||| || |||| || |||||||||||| |
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| T |
40817698 |
aaaaagaatggccagaatttatcctcaacaagaatccaca |
40817659 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 254
Target Start/End: Complemental strand, 40807380 - 40807350
Alignment:
| Q |
224 |
attgtctcatcagcaggtctaataaaagaga |
254 |
Q |
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| T |
40807380 |
attgtctcatcagcaggtctaataaaagaga |
40807350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0415 (Bit Score: 165; Significance: 3e-88; HSPs: 1)
Name: scaffold0415
Description:
Target: scaffold0415; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 73 - 259
Target Start/End: Original strand, 14575 - 14763
Alignment:
| Q |
73 |
taggcatataaataagctgttgatcaccacacttctttcaaaa-atcaaaacatacaccaattaatagaagctcaatcctcttgaatatcacaatcataa |
171 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14575 |
taggcatataaataagctgttgatcaccacacttctttcaaaaaatcaaaacatacaccaattaatagaagctcaatcctcttgaatatcacaatcataa |
14674 |
T |
|
| Q |
172 |
tagtaac-aaaaaatggccaaggttcatccacatcaagaatccacatcctctgattgtctcatcagcaggtctaataaaagagaaacat |
259 |
Q |
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||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
14675 |
tagtaacaaaaaaatggccaaagttcatccacatcaagaatccacatcctctgattctctcatcagcaggtctaataaaagagaaacat |
14763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0559 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: scaffold0559
Description:
Target: scaffold0559; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 127 - 214
Target Start/End: Original strand, 8776 - 8865
Alignment:
| Q |
127 |
caccaattaat-agaagctcaatcctcttgaatatcacaatcataatagtaacaaaaaatggcc-aaggttcatccacatcaagaatcca |
214 |
Q |
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||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| || |||||||||||||||||| |
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| T |
8776 |
caccaattaattagaagcttgatcctcttgaatatcacaatcataatagtaacaaaaaatggccaaagttttatccacatcaagaatcca |
8865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0559; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 254
Target Start/End: Original strand, 7246 - 7276
Alignment:
| Q |
224 |
attgtctcatcagcaggtctaataaaagaga |
254 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
7246 |
attgtctcatcagcaggtctaataaaagaga |
7276 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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