View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1252_low_16 (Length: 336)

Name: NF1252_low_16
Description: NF1252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1252_low_16
NF1252_low_16
[»] chr4 (6 HSPs)
chr4 (100-266)||(1160211-1160383)
chr4 (194-258)||(1172323-1172387)
chr4 (190-237)||(1141865-1141912)
chr4 (191-237)||(1137266-1137312)
chr4 (191-258)||(1164962-1165029)
chr4 (194-231)||(1133696-1133733)
[»] chr1 (1 HSPs)
chr1 (195-251)||(15612601-15612657)


Alignment Details
Target: chr4 (Bit Score: 142; Significance: 2e-74; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 100 - 266
Target Start/End: Original strand, 1160211 - 1160383
Alignment:
Q  100 gataattcctgcagctgctccacctgaccttcctctaccaattcctcttcctcccattccacttccatggccacctgaacctccatg------tcctcct 193  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      |||||||    
T  1160211 gataattcctgcagctgctccacctgaccttcctctaccaattcctcttcctcccattccacttccatggccacctgaacctccatgtcctcctcctcct 1160310  T
Q  194 cctccctttcttatagtaacagatagttcatgtttgtgtgcattttgactttcctcaaacccatctctgtggt 266  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||    
T  1160311 cctccctttcttatagtaacagatagttcatgtttgtgtgcattttgactttccacaaacccatctttgtggt 1160383  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 194 - 258
Target Start/End: Original strand, 1172323 - 1172387
Alignment:
Q  194 cctccctttcttatagtaacagatagttcatgtttgtgtgcattttgactttcctcaaacccatc 258  Q
    ||||||||||||||||||| ||||||||||||||||||  ||||  |||||||| | ||||||||    
T  1172323 cctccctttcttatagtaagagatagttcatgtttgtgatcattccgactttccacgaacccatc 1172387  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 190 - 237
Target Start/End: Original strand, 1141865 - 1141912
Alignment:
Q  190 tcctcctccctttcttatagtaacagatagttcatgtttgtgtgcatt 237  Q
    ||||||||| |||||||| |||||||||||||||||||||||| ||||    
T  1141865 tcctcctccttttcttatggtaacagatagttcatgtttgtgttcatt 1141912  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 191 - 237
Target Start/End: Original strand, 1137266 - 1137312
Alignment:
Q  191 cctcctccctttcttatagtaacagatagttcatgtttgtgtgcatt 237  Q
    |||||||| |||||||| |||||||||||||||||||||||| ||||    
T  1137266 cctcctccttttcttatggtaacagatagttcatgtttgtgttcatt 1137312  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 191 - 258
Target Start/End: Original strand, 1164962 - 1165029
Alignment:
Q  191 cctcctccctttcttatagtaacagatagttcatgtttgtgtgcattttgactttcctcaaacccatc 258  Q
    |||||||||||||||||||||   |||||||||||||||||  ||||  |||||||| | ||||||||    
T  1164962 cctcctccctttcttatagtatgggatagttcatgtttgtgatcattccgactttccgcgaacccatc 1165029  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 231
Target Start/End: Original strand, 1133696 - 1133733
Alignment:
Q  194 cctccctttcttatagtaacagatagttcatgtttgtg 231  Q
    ||||| ||||||| ||||||||||||||||||||||||    
T  1133696 cctccttttcttacagtaacagatagttcatgtttgtg 1133733  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 251
Target Start/End: Complemental strand, 15612657 - 15612601
Alignment:
Q  195 ctccctttcttatagtaacagatagttcatgtttgtgtgcattttgactttcctcaa 251  Q
    ||||||||||||||||| ||||||| ||||| ||| || |||||| |||||||||||    
T  15612657 ctccctttcttatagtagcagatagatcatgattgcgttcattttaactttcctcaa 15612601  T

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