View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1252_low_17 (Length: 335)
Name: NF1252_low_17
Description: NF1252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1252_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 69 - 286
Target Start/End: Original strand, 6869468 - 6869685
Alignment:
| Q |
69 |
caacaatatacacagagacctcaaaaactgttaatcttttgatggattagaaaggggtaagtgactattaatttgtcatttcttttcattttacaggttc |
168 |
Q |
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| T |
6869468 |
caacattatacatagagacttcaaaa-ctgttaatcttttgatggattagaaaggggtaagtgactattaatttatcatttcttttgattttacaagttc |
6869566 |
T |
|
| Q |
169 |
ttgttcttaggtaatgctttcaaatcatactataacaatataaaccactctaaaactctagttgtgtatattatggcatgctagcgtattgtacactaaa |
268 |
Q |
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| T |
6869567 |
ttgttcttaggtaatgctttcaaatcatactataacaatataaaccactctaaaactctagttgtgtatattatggcatgctagcgtattgtacactaaa |
6869666 |
T |
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| Q |
269 |
gctca-gttgactggaagg |
286 |
Q |
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||||| ||||| ||||||| |
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| T |
6869667 |
gctcatgttgagtggaagg |
6869685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 75 - 273
Target Start/End: Original strand, 41222083 - 41222280
Alignment:
| Q |
75 |
tatacacagagacctcaaaaactgttaatcttttgatggattagaaaggggtaagtgactattaatttgtcatttcttttcattttacaggttcttgttc |
174 |
Q |
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| T |
41222083 |
tatacatagagacctcaaaaa-tgttagtattttgatggatgagaaaggggtaagtgactattaatttgtcatttcttttgattttacaggttcttgttc |
41222181 |
T |
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| Q |
175 |
ttaggtaatgctttcaaatcatactataacaatataaaccactctaaaactctagttgtgtatattatggcatgctagcgtattgtacactaaagctca |
273 |
Q |
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| T |
41222182 |
ttagttaatgctttcaaatcatactataacaatataaaccactctaaaactctagttgtgtatattatggcatgctagcgtattgtacactaaagctca |
41222280 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 143; Significance: 4e-75; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 69 - 286
Target Start/End: Complemental strand, 8450131 - 8449914
Alignment:
| Q |
69 |
caacaatatacacagagacctcaaaaactgttaatcttttgatggattagaaaggggtaagtgactattaatttgtcatttcttttcattttacaggttc |
168 |
Q |
| |
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||||| |||||| |||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
8450131 |
caacattatacatcgagacctcaaaa-ctgctaatcttttgatggatgagaaaggggtaagtgactattaatttgtcatttcttttgattttacaggttc |
8450033 |
T |
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| Q |
169 |
ttgttcttaggtaatgctttcaaatcatactataacaatataaaccactctaaaactctagttgtgtatattatggcatgctagcgtattgtacactaaa |
268 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |||| |||| |||| |
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| T |
8450032 |
ttgttcttgaataatgctttcaaatcatactataacaatataaaccactctaaaactgtagttgtgtatattattgcatgctagcttattatacattaaa |
8449933 |
T |
|
| Q |
269 |
gctca-gttgactggaagg |
286 |
Q |
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||||| || |||||||||| |
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| T |
8449932 |
gctcatgtcgactggaagg |
8449914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 103 - 243
Target Start/End: Complemental strand, 48731181 - 48731040
Alignment:
| Q |
103 |
tcttttgatggattagaaaggggtaagtgactattaatttgtcatttcttttcattttacaggttcttgttcttaggtaatgctttcaaatcatactata |
202 |
Q |
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||||||||||||| ||||| ||||||||||||||||||||||||||||||| |||||||| |||||||||||||| | ||||||||||||||||||||| |
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| T |
48731181 |
tcttttgatggatgagaaatgggtaagtgactattaatttgtcatttctttgaattttacaagttcttgttcttagttgatgctttcaaatcatactata |
48731082 |
T |
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| Q |
203 |
-acaatataaaccactctaaaactctagttgtgtatattatg |
243 |
Q |
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| T |
48731081 |
taaaatataaaccactctaaaactctagttgtgtatgttatg |
48731040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 135; Significance: 3e-70; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 69 - 243
Target Start/End: Complemental strand, 3106667 - 3106494
Alignment:
| Q |
69 |
caacaatatacacagagacctcaaaaactgttaatcttttgatggattagaaaggggtaagtgactattaatttgtcatttcttttcattttacaggttc |
168 |
Q |
| |
|
||||| |||||| ||||||||||||| |||| ||||||||||||||| ||||||||||||||||||||||||||| |||||||||| ||||||||||||| |
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| T |
3106667 |
caacattatacatagagacctcaaaa-ctgtaaatcttttgatggatgagaaaggggtaagtgactattaatttgccatttcttttgattttacaggttc |
3106569 |
T |
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| Q |
169 |
ttgttcttaggtaatgctttcaaatcatactataacaatataaaccactctaaaactctagttgtgtatattatg |
243 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
3106568 |
ttgttcttagttaatgctttcaaatcatactataacaatataaatcactctaaaactctagttgtgtatattatg |
3106494 |
T |
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