View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1252_low_2 (Length: 728)
Name: NF1252_low_2
Description: NF1252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1252_low_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 372; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 312 - 716
Target Start/End: Complemental strand, 38944537 - 38944125
Alignment:
| Q |
312 |
tgtatactaatggaactactgtattgaaggtaagtttcttgccgtcagagaaggtgggtttaggcattgggtttgttcaagtcattatcattttttgtat |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38944537 |
tgtatactaatggaactactgtattgaaggtaagtttcttgccgtcagagaaggtgggtttaggcattgggtttgttcaagtcattatcattttttgtat |
38944438 |
T |
|
| Q |
412 |
ttgattttatgctcataacatgtttgtgaaattgactcaggataagaaa--------ctaatgttgaatctacacatgatttttgcaaatttttcatttc |
503 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38944437 |
ttgattttatgctcataacatgtttgtgaaattgactcaggataagaaagtaagaaactaatgttgaatctacacatgatttttgcaaatttttcatttc |
38944338 |
T |
|
| Q |
504 |
tctaaattatcacgtaagtgctgatcttcttacaatggactgtcatttgcattgctgaatcctttgtttttatttggttagtatttttatgctcctcaaa |
603 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38944337 |
tctaaattatcatgtaagtgctgatcttcttacaatggactgtcatttgcattgctgaatcctttgtttttatttggttagtatttttatgctcctcaaa |
38944238 |
T |
|
| Q |
604 |
ctttacatatgacaggtggagcagttcctaaaagcattcaagttgaagagtttttattttagtgtgattttgtcaacttatgaatttatagctacatatg |
703 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
38944237 |
ctttacatatgacaggtggagcatttcctaaaagcattcaagttgaagagtttttattttagtgtgattttgtcaacttatgaatttatagccacatatg |
38944138 |
T |
|
| Q |
704 |
aaaaatggagaat |
716 |
Q |
| |
|
||||||||||||| |
|
|
| T |
38944137 |
aaaaatggagaat |
38944125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 92 - 313
Target Start/End: Complemental strand, 38944781 - 38944560
Alignment:
| Q |
92 |
aggattaagtcccaacctttttgaaacctgatcaaccaaaatctgttcaagttttgctgattgatgagaaggtaattactttcattttgttattcatact |
191 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38944781 |
aggattaagtcccaacctttttgaaacctgatcaaccaaaatctgttcaagttttgctgattgatgagaaggtaattactttcattttgttattcatact |
38944682 |
T |
|
| Q |
192 |
tggtagtgattttcctctttgaattatgtaattgtgaatggtaccctctgttattgttatagtgtgccacaactaggaaacaattcttttatgtttttca |
291 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| || ||||||||||| |
|
|
| T |
38944681 |
tggtagtgattttcctctttgaattatgtaattgtgaatcgtaccctctgttattgttatagggtgccacaactaggaaacaattgttgtatgtttttca |
38944582 |
T |
|
| Q |
292 |
gaagaattgggacctaaatatg |
313 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
38944581 |
gaagaattgggacctaaatatg |
38944560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 128 - 715
Target Start/End: Original strand, 29378542 - 29379113
Alignment:
| Q |
128 |
caaaatctgttcaagttttgctgattgatgagaa-ggtaattactttcattttgttattcatacttggtagtgattttcctctttgaattatgtaattgt |
226 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
29378542 |
caaattctgttcaaattttgctgattgatgagaaaggtagttactttcattttgttattcatactttgtagtgattttcctctttgaattatgtaattgt |
29378641 |
T |
|
| Q |
227 |
gaatggtaccctctgttattgttatagtgtgccacaactaggaaacaattcttttatgtttttcagaagaattgggacctaaatatgtatactaatggaa |
326 |
Q |
| |
|
|||| ||||||||| |||||||||||| ||||||||| |||||||||||| || ||||| | | ||| | | | || |||||||||||||| |
|
|
| T |
29378642 |
gaatcgtaccctcttttattgttatagggtgccacaattaggaaacaattgttgtatgtat-----actaatctgaatccaatattgtatactaatggag |
29378736 |
T |
|
| Q |
327 |
ctactgtattgaaggtaagtttcttgccgtcagagaaggtgggtttaggcattgggtttgttcaagtcattatcattttttgtatttgattttatgctca |
426 |
Q |
| |
|
||||||||||| | |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
29378737 |
ctactgtattgcatgtaagtttcttgccatcagagaaggtgggtttaggaattgggtttgttcaagtcattatcatgattagtatttgattttatgctca |
29378836 |
T |
|
| Q |
427 |
taacatgtttgtgaaattgactcaggataagaaactaatgttgaatctacacatgatttttgcaaatttttcatttctctaaattatcacgtaagtgctg |
526 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||||||||| ||||| |||||| |||||||||||| ||||| ||||||| |||||| | | |
|
|
| T |
29378837 |
taacatgtttgt----------caggataagaaactgatgttgaatctgcacataattttttcaaatttttcat--ctctatattatcatgtaagtaccg |
29378924 |
T |
|
| Q |
527 |
atcttcttacaatggactgtcatttgcattgctgaatcctttgtttttatttggttagtatttttatgctcctcaaactttacatatgacaggtggagca |
626 |
Q |
| |
|
||||||||| |||||||||||||||||||||| |||| || ||||||| ||||||||||||||| | ||| |||||||||| |||||||||||||||||| |
|
|
| T |
29378925 |
atcttcttataatggactgtcatttgcattgcggaattctctgtttttctttggttagtattttcaagcttctcaaactttgcatatgacaggtggagca |
29379024 |
T |
|
| Q |
627 |
gttcctaaaagcattcaagttgaagagtttttattttagtgtgattttgtcaacttatgaatttatagctacatatgaaaaatggagaa |
715 |
Q |
| |
|
|||||||||||||||||||||||| | |||||||||| |||| ||||||||||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
29379025 |
gttcctaaaagcattcaagttgaaaaatttttattttggtgttgttttgtcaacttacgaatttataggtacatatgaaaaatggagaa |
29379113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 322 - 715
Target Start/End: Complemental strand, 5461115 - 5460722
Alignment:
| Q |
322 |
tggaactactgtattgaaggtaagtttcttgccgtcagagaaggtgggtttaggcattgggtttgttcaagtcattatcattttttgtatttgattttat |
421 |
Q |
| |
|
|||| ||||||||||| | |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5461115 |
tggagctactgtattgcatgtaagtttcttgccatcagagaaggtgggtttaggaattgggtttgttcaagtcattatcattttttgtatttgattttat |
5461016 |
T |
|
| Q |
422 |
gctcataacatgtttgtgaaattgactcaggataagaaactaatgttgaatctacacatgatttttgcaaatttttcatttctctaaattatcacgtaag |
521 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||| ||||||||||| ||||| |||||| |||||||||||| |||||| ||||||| |||| |
|
|
| T |
5461015 |
gctcataacatgtttgtgaaattgtctcaggataagaaactgatgttgaatctgcacataattttttcaaatttttcatctctctatattatcatgtaaa |
5460916 |
T |
|
| Q |
522 |
tgctgatcttcttacaatggactgtcatttgcattgctgaatcctttgtttttatttggttagtatttttatgctcctcaaactttacatatgacaggtg |
621 |
Q |
| |
|
| | |||||||||| ||||||||||||||||||||||||||| |||||||||| ||||||||||||||| | ||| |||||||||| ||||||||||||| |
|
|
| T |
5460915 |
taccgatcttcttataatggactgtcatttgcattgctgaattctttgtttttctttggttagtattttcaagcttctcaaactttgcatatgacaggtg |
5460816 |
T |
|
| Q |
622 |
gagcagttcctaaaagcattcaagttgaagagtttttattttagtgtgattttgtcaacttatgaatttatagctacatatgaaaaatggagaa |
715 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||| |||| ||||||||||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
5460815 |
gagcagttcctaaaagcattcaagttgaagaatttttattttggtgttgttttgtcaacttacgaatttataggtacatatgaaaaatggagaa |
5460722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 128 - 285
Target Start/End: Complemental strand, 5461290 - 5461132
Alignment:
| Q |
128 |
caaaatctgttcaagttttgctgattgatgagaa-ggtaattactttcattttgttattcatacttggtagtgattttcctctttgaattatgtaattgt |
226 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
5461290 |
caaattctgttcaaattttgctgattgatgagaaaggtagttactttcattttgttattcatactttgtagtgattttcctctttgaattatgtaattgt |
5461191 |
T |
|
| Q |
227 |
gaatggtaccctctgttattgttatagtgtgccacaactaggaaacaattcttttatgt |
285 |
Q |
| |
|
|||| ||||||||| |||||||||||| ||||||||| |||||||||||| || ||||| |
|
|
| T |
5461190 |
gaatcgtaccctcttttattgttatagggtgccacaattaggaaacaattgttgtatgt |
5461132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 111; Significance: 1e-55; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 525 - 714
Target Start/End: Original strand, 43414817 - 43415007
Alignment:
| Q |
525 |
tgatcttcttacaatggactgtcatttgcattgctgaatcctttgttttta-tttggttagtatttttatgctcctcaaactttacatatgacaggtgga |
623 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||||||||| |||| ||||| ||||||||||||||| | ||| | ||||||| ||||||||||||||| |
|
|
| T |
43414817 |
tgatcttcttacgatggattgtcatttgcattgctgaattcttttttttttctttggttagtattttcaggcttttaaaactttgcatatgacaggtgga |
43414916 |
T |
|
| Q |
624 |
gcagttcctaaaagcattcaagttgaagagtttttattttagtgtgattttgtcaacttatgaatttatagctacatatgaaaaatggaga |
714 |
Q |
| |
|
||||||||||||||||||||||||||||| | |||||||| |||| |||||||||||||||||||||||| |||||||||||||| |||| |
|
|
| T |
43414917 |
gcagttcctaaaagcattcaagttgaagaatatttattttggtgtatttttgtcaacttatgaatttataggtacatatgaaaaattgaga |
43415007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 314 - 487
Target Start/End: Original strand, 43414636 - 43414809
Alignment:
| Q |
314 |
tatactaatggaactactgtattgaaggtaagtttcttgccgtcagagaaggtgggtttaggcattgggtttgttcaagtcattatcattttttgtattt |
413 |
Q |
| |
|
|||||||||||| ||||||||||| | |||| |||||||| |||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
43414636 |
tatactaatggagctactgtattgcatgtaaatttcttgctatcagagaaggcgggtttagggattgggtttattcaagtcattatcattttttgtattt |
43414735 |
T |
|
| Q |
414 |
gattttatgctcataacatgtttgtgaaattgactcaggataagaaactaatgttgaatctacacatgattttt |
487 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||| || || |||||| |
|
|
| T |
43414736 |
gattttatgctcataacatgtttgtgaaattgtctcaggataagaaaccgatgtttaatctgcatataattttt |
43414809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 92 - 309
Target Start/End: Original strand, 43414402 - 43414607
Alignment:
| Q |
92 |
aggattaagtcccaacctttttgaaacctgatcaaccaaaatctgttcaagttttgctgattgatgagaa-ggtaattactttcattttgttattcatac |
190 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
43414402 |
aggattaagtcccaacctttttgaatcctgatcaaccaaaatctgttcaaattttgctgattgatgagaaaggtaatta-------------attcatac |
43414488 |
T |
|
| Q |
191 |
ttg-gtagtgattttcctctttgaattatgtaattgtgaatggtaccctctgttattgttatagtgtgccacaactaggaaacaattcttttatgttttt |
289 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||| |||||||||||| | |||| |||| |
|
|
| T |
43414489 |
ttttgtagtgattttcctctttgaattatgtaattgtgaatcgtacc-tctgttattgttatatggtgccacaattaggaaacaattgatgtatgctttt |
43414587 |
T |
|
| Q |
290 |
cagaagaattgggacctaaa |
309 |
Q |
| |
|
|||||||||| ||||||||| |
|
|
| T |
43414588 |
cagaagaattaggacctaaa |
43414607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 83; Significance: 6e-39; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 369 - 515
Target Start/End: Complemental strand, 30872122 - 30871977
Alignment:
| Q |
369 |
gtttaggcattgggtttgttcaagtcattatcattttttgtatttgattttatgctcataacatgtttgtgaaattgactcaggataagaaactaatgtt |
468 |
Q |
| |
|
||||||| ||||||| || |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||| |
|
|
| T |
30872122 |
gtttagggattgggtgtgatcaattcattatcattttttgtatttgattttatgctcatggcatgtttgtgaaattgtatcaggataagaaactgatgtt |
30872023 |
T |
|
| Q |
469 |
gaatctacacatgatttttgcaaatttttcatttctctaaattatca |
515 |
Q |
| |
|
|||| ||| | |||||||||||||||||||||||||| ||||||| |
|
|
| T |
30872022 |
gaattgaca-aaaatttttgcaaatttttcatttctctagattatca |
30871977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 638 - 709
Target Start/End: Complemental strand, 30871878 - 30871807
Alignment:
| Q |
638 |
cattcaagttgaagagtttttattttagtgtgattttgtcaacttatgaatttatagctacatatgaaaaat |
709 |
Q |
| |
|
||||||||||||||| |||||||| | | ||| |||||||||||| ||||||||| | | ||||| |||||| |
|
|
| T |
30871878 |
cattcaagttgaagaatttttattatggcgtggttttgtcaacttttgaatttatggttgcatatcaaaaat |
30871807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University