View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1252_low_20 (Length: 321)
Name: NF1252_low_20
Description: NF1252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1252_low_20 |
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| [»] scaffold0008 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 277; Significance: 1e-155; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 6139458 - 6139166
Alignment:
| Q |
1 |
aatgaaaaacaaaatataatcacaagtaattaagaaagtatatatacctcatccctgagagcgttcctctcttccctaagttcattagaagttgaaatga |
100 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6139458 |
aatgaaaaacaaaaaataatcacaagtaattaagaaagtatatatacctcatccctgagagcgttcctctcttccctaagttcattagaagttgaaatga |
6139359 |
T |
|
| Q |
101 |
aaatgtggttattaccgccaggacgagatggattctctgatcttgcgaatgttgaattggtctgcatgtactcaccagtttgttcaacagtgctaaacct |
200 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6139358 |
aaatgcggttattaccgccaggacgagatggattctctgatcttgcgaatgttgaattggtctgcatgtactcaccagtttgttcaacagtgctaaacct |
6139259 |
T |
|
| Q |
201 |
cgatctaggaggaggtggaggaggatttagcctgtaattactcaatgatggatctgaaggtggaggtggttgtcgtggtggtacaaaactgct |
293 |
Q |
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| T |
6139258 |
cgatctaggaggaggtggaggaggatttagcatgtaattactcaatgatggatctgaaggtggaggtggttgccgtggtggtacaaaactgct |
6139166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 22 - 109
Target Start/End: Complemental strand, 6152315 - 6152228
Alignment:
| Q |
22 |
acaagtaattaagaaagtatatatacctcatccctgagagcgttcctctcttccctaagttcattagaagttgaaatgaaaatgtggt |
109 |
Q |
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| T |
6152315 |
acaagtaattaagaaagtatatatacctcaatcctgagcctgttcctctctggcctaagttcatgagaagttgaaatgaaattgtggt |
6152228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 23 - 102
Target Start/End: Complemental strand, 6126712 - 6126633
Alignment:
| Q |
23 |
caagtaattaagaaagtatatatacctcatccctgagagcgttcctctcttccctaagttcattagaagttgaaatgaaa |
102 |
Q |
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| T |
6126712 |
caagtaactaagaaagtatatatacctcaaccatgagcatgttcctctctagcctaagttcatgagaagttgaaatgaaa |
6126633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 109
Target Start/End: Complemental strand, 6146128 - 6146042
Alignment:
| Q |
23 |
caagtaattaagaaagtatatatacctcatccctgagagcgttcctctcttccctaagttcattagaagttgaaatgaaaatgtggt |
109 |
Q |
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| T |
6146128 |
caagtaacttagaaagtatatgtacctcaaccctgtgcctgttcctctctggcctaagttcatgagaagttgaaattaaattgtggt |
6146042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 173; Significance: 5e-93; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 25364255 - 25363988
Alignment:
| Q |
1 |
aatgaaaaacaaaatataatcacaagtaattaagaaagtatatatacctcatccctgagagcgttcctctcttccctaagttcattagaagttgaaatga |
100 |
Q |
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|||||| ||| ||| ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
25364255 |
aatgaacaaccaaaaataatcacaagtaattaagaaagcatatatacctcatccatgagagcgttcctctcttccctaagttcatcagaagttgaaatga |
25364156 |
T |
|
| Q |
101 |
aaatgtggttattaccgccaggacgagatggattctctgatcttgcgaatgttgaattggtctgcatgtactcaccagtttgttcaacagtgctaaacct |
200 |
Q |
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| T |
25364155 |
aaatgcggttattaccgccagaaagagctggattctctgatcttgccaatgttgaattgttctgcatg-actcgccagtttgaaaaacagtactaaacct |
25364057 |
T |
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| Q |
201 |
cgatctaggaggaggtggaggaggatttagcctgtaattactcaatgatggatctgaaggtggaggtgg |
269 |
Q |
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| T |
25364056 |
cgatctaggaggaggtggagggggatttagcctgtaattactcggtggtggatctgaaggaggaggtgg |
25363988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008 (Bit Score: 165; Significance: 3e-88; HSPs: 2)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 7816 - 8099
Alignment:
| Q |
1 |
aatgaaaaacaaaatataatcacaagtaattaagaaagtatatatacctcatccctgagagcgttcctctcttccctaagttcattagaagttgaaatga |
100 |
Q |
| |
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|||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |
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| T |
7816 |
aatgaacaaccaaaaataatcacaagtaattaagaaagtatatatacctcatccctgagagcgttcctcccttccctaagttcatcagaagttgaaatga |
7915 |
T |
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| Q |
101 |
aaatgtggttattaccgccaggacgagatggattctctgatcttgcgaatgttgaattggtctgcatgtactcaccagttt-gttcaacagtgctaaacc |
199 |
Q |
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| T |
7916 |
aaatgcgcttattaccaccaggacgagctggattctctgatcttgccaatgttgaattgttttgcatg-actcgccagtttaaaaaaacagtactaaagc |
8014 |
T |
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| Q |
200 |
tcgatctaggaggaggtggaggaggatttagcctgtaattactcaatgatggatctgaaggtggaggtggttgtcgtggtggtac |
284 |
Q |
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|||| ||||||||||||||||| ||||||||| ||||||||||| ||| |||||||||||| |||||||||||| |||||||||| |
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| T |
8015 |
tcgacctaggaggaggtggagggggatttagcttgtaattactcgatggtggatctgaaggaggaggtggttgttgtggtggtac |
8099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008; HSP #2
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 18397 - 18704
Alignment:
| Q |
1 |
aatgaaaaacaaaatataatcacaagtaattaagaaagtatatatacctcatccctgagagcgttcctctcttccctaagttcattagaagttgaaatga |
100 |
Q |
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|||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |
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| T |
18397 |
aatgaacaaccaaaaataatcacaagtaattaagaaagtatatatacctcatccctgagagcgttcctcccttccctaagttcatcagaagttgaaatga |
18496 |
T |
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| Q |
101 |
aaatg------------------tggttattaccgccaggacgagatggattctctgatcttgcgaatgttgaattggtctgcatgtactcaccagttt- |
181 |
Q |
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||||| | |||||||| |||||||||| |||||||||||||||||| |||||||||||| | |||||| |||| ||||||| |
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| T |
18497 |
aaatgcgcttattaccaccaggacgcttattaccaccaggacgagctggattctctgatcttgccaatgttgaattgttttgcatg-actcgccagttta |
18595 |
T |
|
| Q |
182 |
gttcaacagtgctaaacctcgatctaggaggaggtggaggaggatttagcctgtaattactcaatgatggatctgaaggtggaggtggttgtcgtggtgg |
281 |
Q |
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|||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| || |||||||||||| |||||||||||||||||||| |
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| T |
18596 |
aaaaaacagtactaaacctcgatctaggaggaggtggagggggatttagcctgtaattactcggtggtggatctgaaggaggaggtggttgtcgtggtgg |
18695 |
T |
|
| Q |
282 |
tacaaaact |
290 |
Q |
| |
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|||| |||| |
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| T |
18696 |
tacagaact |
18704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 94 - 170
Target Start/End: Original strand, 7917821 - 7917897
Alignment:
| Q |
94 |
gaaatgaaaatgtggttattaccgccaggacgagatggattctctgatcttgcgaatgttgaattggtctgcatgta |
170 |
Q |
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||||||||||| | |||||||||||||| ||||| |||||||||||| ||||| |||||||||| || |||||||| |
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| T |
7917821 |
gaaatgaaaatatcgttattaccgccagcacgagctggattctctgaacttgccaatgttgaatcagtttgcatgta |
7917897 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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