View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1252_low_21 (Length: 312)

Name: NF1252_low_21
Description: NF1252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1252_low_21
NF1252_low_21
[»] chr4 (5 HSPs)
chr4 (75-245)||(1879312-1879482)
chr4 (178-224)||(22143813-22143859)
chr4 (148-225)||(14723051-14723127)
chr4 (179-226)||(17296658-17296704)
chr4 (179-228)||(8098249-8098297)
[»] chr2 (9 HSPs)
chr2 (75-245)||(34531649-34531819)
chr2 (75-245)||(26721474-26721643)
chr2 (179-228)||(20615733-20615781)
chr2 (177-228)||(25499594-25499644)
chr2 (150-200)||(21118014-21118064)
chr2 (179-228)||(15948189-15948237)
chr2 (179-228)||(24290120-24290168)
chr2 (179-228)||(35143611-35143659)
chr2 (179-228)||(42569667-42569715)
[»] chr7 (7 HSPs)
chr7 (75-245)||(1890663-1890832)
chr7 (75-245)||(13482309-13482478)
chr7 (147-228)||(5204682-5204762)
chr7 (148-225)||(16240360-16240436)
chr7 (144-228)||(16485113-16485198)
chr7 (177-228)||(29027250-29027300)
chr7 (148-225)||(2559471-2559547)
[»] scaffold1837 (1 HSPs)
scaffold1837 (75-245)||(900-1069)
[»] chr8 (6 HSPs)
chr8 (75-245)||(16771198-16771367)
chr8 (143-228)||(6667808-6667892)
chr8 (177-228)||(17678084-17678134)
chr8 (148-225)||(14214991-14215067)
chr8 (148-225)||(22414864-22414940)
chr8 (153-198)||(32004153-32004198)
[»] chr6 (12 HSPs)
chr6 (75-245)||(27547769-27547938)
chr6 (75-245)||(25709810-25709979)
chr6 (147-228)||(18753356-18753436)
chr6 (148-228)||(15648657-15648736)
chr6 (147-228)||(16584219-16584299)
chr6 (147-228)||(16611081-16611161)
chr6 (147-228)||(28308311-28308391)
chr6 (149-228)||(25501630-25501706)
chr6 (177-228)||(27053900-27053950)
chr6 (179-228)||(5991395-5991443)
chr6 (148-225)||(18122412-18122488)
chr6 (148-225)||(18209853-18209929)
[»] chr3 (13 HSPs)
chr3 (75-245)||(27561067-27561236)
chr3 (75-245)||(4452598-4452767)
chr3 (84-228)||(18904489-18904633)
chr3 (147-228)||(8200682-8200762)
chr3 (178-245)||(6960702-6960768)
chr3 (149-228)||(9550349-9550425)
chr3 (148-226)||(14394092-14394170)
chr3 (177-228)||(14662417-14662466)
chr3 (148-225)||(6574262-6574338)
chr3 (148-225)||(7086341-7086417)
chr3 (148-225)||(11922627-11922703)
chr3 (179-228)||(41003277-41003325)
chr3 (179-228)||(41012058-41012106)
[»] chr5 (4 HSPs)
chr5 (84-245)||(20374757-20374917)
chr5 (178-224)||(349354-349400)
chr5 (179-228)||(24960324-24960372)
chr5 (179-228)||(28848795-28848843)
[»] chr1 (4 HSPs)
chr1 (75-245)||(13456637-13456806)
chr1 (148-228)||(13468654-13468733)
chr1 (147-227)||(2389543-2389622)
chr1 (179-228)||(31544949-31544997)
[»] scaffold0031 (1 HSPs)
scaffold0031 (75-225)||(15623-15773)
[»] scaffold0016 (1 HSPs)
scaffold0016 (147-228)||(20575-20655)
[»] scaffold0389 (1 HSPs)
scaffold0389 (147-225)||(4763-4840)
[»] scaffold0605 (1 HSPs)
scaffold0605 (147-228)||(3800-3880)
[»] scaffold0046 (1 HSPs)
scaffold0046 (148-225)||(51848-51924)
[»] scaffold0015 (1 HSPs)
scaffold0015 (147-228)||(172708-172787)
[»] scaffold0083 (1 HSPs)
scaffold0083 (177-228)||(20559-20609)
[»] scaffold0404 (1 HSPs)
scaffold0404 (148-225)||(13157-13233)
[»] scaffold0023 (1 HSPs)
scaffold0023 (147-228)||(141426-141506)
[»] scaffold0009 (1 HSPs)
scaffold0009 (144-200)||(155275-155331)


Alignment Details
Target: chr4 (Bit Score: 151; Significance: 7e-80; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 75 - 245
Target Start/End: Complemental strand, 1879482 - 1879312
Alignment:
Q  75 catcagatgaagcatcactcacttggggcacctcagccgtcaagagatcctcgatattgaagcaatcgaaatagtggaattcaaagttggtaggaagtat 174  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  1879482 catcagatgaagcatcactcacttggggcacctcagccgtcaaaagatcctcgatattgaagcaatcgtaatagtggaattcaaagttggtaggaagtat 1879383  T
Q  175 gatggttattgtgttcaatgtaccttcctcatattaattaccattttccaaactgttgtgatctgtggtgc 245  Q
    || ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  1879382 gagggttattgtgttcaatgtaccttccccatattaattaccattttccaaacttttgtgatctgtggtgc 1879312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 224
Target Start/End: Complemental strand, 22143859 - 22143813
Alignment:
Q  178 ggttattgtgttcaatgtaccttcctcatattaattaccattttcca 224  Q
    ||||||| ||||||||||||||||| |||||||||||||||| ||||    
T  22143859 ggttattatgttcaatgtaccttccccatattaattaccattgtcca 22143813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 148 - 225
Target Start/End: Complemental strand, 14723127 - 14723051
Alignment:
Q  148 gtggaattcaaagttggtaggaagtatgatggttattgtgttcaatgtaccttcctcatattaattaccattttccaa 225  Q
    |||||||||||||| | ||||||||||   ||||||||||||||||||||||  | |||| |||||||||| ||||||    
T  14723127 gtggaattcaaagtggttaggaagtatagcggttattgtgttcaatgtacctatcccata-taattaccatattccaa 14723051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 179 - 226
Target Start/End: Complemental strand, 17296704 - 17296658
Alignment:
Q  179 gttattgtgttcaatgtaccttcctcatattaattaccattttccaaa 226  Q
    |||||||||||||||||||||||  |||| ||||||||||||||||||    
T  17296704 gttattgtgttcaatgtaccttctccata-taattaccattttccaaa 17296658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 228
Target Start/End: Complemental strand, 8098297 - 8098249
Alignment:
Q  179 gttattgtgttcaatgtaccttcctcatattaattaccattttccaaact 228  Q
    ||||||||||||||||||||||   |||| ||||||||||||||||||||    
T  8098297 gttattgtgttcaatgtaccttttccata-taattaccattttccaaact 8098249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 147; Significance: 2e-77; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 75 - 245
Target Start/End: Complemental strand, 34531819 - 34531649
Alignment:
Q  75 catcagatgaagcatcactcacttggggcacctcagccgtcaagagatcctcgatattgaagcaatcgaaatagtggaattcaaagttggtaggaagtat 174  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  34531819 catcagatgaagcatcactcacttggggcacctcagccgtcaaaagatcctcgatattgaagcaatcgtaatagtggaattcaaagttggtaggaagtat 34531720  T
Q  175 gatggttattgtgttcaatgtaccttcctcatattaattaccattttccaaactgttgtgatctgtggtgc 245  Q
    |||||||||| |||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  34531719 gatggttattatgttcagtgtaccttccccatattaattaccattttccaaacttttgtgatctgtggtgc 34531649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 75 - 245
Target Start/End: Complemental strand, 26721643 - 26721474
Alignment:
Q  75 catcagatgaagcatcactcacttggggcacctcagccgtcaagagatcctcgatattgaagcaatcgaaatagtggaattcaaagttggtaggaagtat 174  Q
    ||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  26721643 catcagatgaagcatcactcacttggggcacctaagccgtcaaaagatcttcgatattgaagcaatcgaaatagtggaatccaaagttggtaggaagtat 26721544  T
Q  175 gatggttattgtgttcaatgtaccttcctcatattaattaccattttccaaactgttgtgatctgtggtgc 245  Q
    |||||||||||||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||    
T  26721543 gatggttattgtgttcaatgtaccttccccatattaattaccatgttccaaact-ttgtgatctgtggtgc 26721474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 179 - 228
Target Start/End: Original strand, 20615733 - 20615781
Alignment:
Q  179 gttattgtgttcaatgtaccttcctcatattaattaccattttccaaact 228  Q
    ||||||||||||||||||||||  ||||| ||||||||||||||||||||    
T  20615733 gttattgtgttcaatgtacctttttcata-taattaccattttccaaact 20615781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 177 - 228
Target Start/End: Original strand, 25499594 - 25499644
Alignment:
Q  177 tggttattgtgttcaatgtaccttcctcatattaattaccattttccaaact 228  Q
    ||||||||||||||||||||||||   |||| ||||||||||||||||||||    
T  25499594 tggttattgtgttcaatgtaccttttccata-taattaccattttccaaact 25499644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 200
Target Start/End: Original strand, 21118014 - 21118064
Alignment:
Q  150 ggaattcaaagttggtaggaagtatgatggttattgtgttcaatgtacctt 200  Q
    ||||||||||||||||||| || |   ||||||||||||||||||||||||    
T  21118014 ggaattcaaagttggtagggagaacagtggttattgtgttcaatgtacctt 21118064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 228
Target Start/End: Complemental strand, 15948237 - 15948189
Alignment:
Q  179 gttattgtgttcaatgtaccttcctcatattaattaccattttccaaact 228  Q
    ||||||||||||||||||||||   |||| ||||||||||||||||||||    
T  15948237 gttattgtgttcaatgtaccttttccata-taattaccattttccaaact 15948189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 228
Target Start/End: Original strand, 24290120 - 24290168
Alignment:
Q  179 gttattgtgttcaatgtaccttcctcatattaattaccattttccaaact 228  Q
    ||||||||||||||||||||||   |||| ||||||||||||||||||||    
T  24290120 gttattgtgttcaatgtaccttttccata-taattaccattttccaaact 24290168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 228
Target Start/End: Original strand, 35143611 - 35143659
Alignment:
Q  179 gttattgtgttcaatgtaccttcctcatattaattaccattttccaaact 228  Q
    ||||||||||||||||||||||   |||| ||||||||||||||||||||    
T  35143611 gttattgtgttcaatgtaccttttccata-taattaccattttccaaact 35143659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 228
Target Start/End: Complemental strand, 42569715 - 42569667
Alignment:
Q  179 gttattgtgttcaatgtaccttcctcatattaattaccattttccaaact 228  Q
    ||||||||||||||||||||||   |||| ||||||||||||||||||||    
T  42569715 gttattgtgttcaatgtaccttttccata-taattaccattttccaaact 42569667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 139; Significance: 1e-72; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 75 - 245
Target Start/End: Complemental strand, 1890832 - 1890663
Alignment:
Q  75 catcagatgaagcatcactcacttggggcacctcagccgtcaagagatcctcgatattgaagcaatcgaaatagtggaattcaaagttggtaggaagtat 174  Q
    ||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  1890832 catcagatgaagcatcactcacttggggcacctaagccgtcaaaagatcttcgatattgaagcaatcgaaatagtggaatccaaagttggtaggaagtat 1890733  T
Q  175 gatggttattgtgttcaatgtaccttcctcatattaattaccattttccaaactgttgtgatctgtggtgc 245  Q
    |||||||||||||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||    
T  1890732 gatggttattgtgttcaatgtaccttccccatattaattaccatgttccaaact-ttgtgatctgtggtgc 1890663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 75 - 245
Target Start/End: Complemental strand, 13482478 - 13482309
Alignment:
Q  75 catcagatgaagcatcactcacttggggcacctcagccgtcaagagatcctcgatattgaagcaatcgaaatagtggaattcaaagttggtaggaagtat 174  Q
    ||||||||||| ||||||||||||||||||| | ||  ||||  || ||  ||||||  |||||||  |   ||||||||||||||||| |||  | | |    
T  13482478 catcagatgaaacatcactcacttggggcactttaggtgtcagaagttctccgatatcaaagcaatataggcagtggaattcaaagttgttagagaatgt 13482379  T
Q  175 gatggttattgtgttcaatgtaccttcctcatattaattaccattttccaaactgttgtgatctgtggtgc 245  Q
      |||||||| ||||||||||||||||| |||||||||||||||| |||||| | |||| |||||||||||    
T  13482378 agtggttattatgttcaatgtaccttccccatattaattaccattgtccaaa-ttttgtaatctgtggtgc 13482309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 147 - 228
Target Start/End: Complemental strand, 5204762 - 5204682
Alignment:
Q  147 agtggaattcaaagttggtaggaagtatgatggttattgtgttcaatgtaccttcctcatattaattaccattttccaaact 228  Q
    |||| ||||||||||||||||| || |   ||||||||||||||||| |||||| | ||||| |||||||||||||||||||    
T  5204762 agtgaaattcaaagttggtagggagaacagtggttattgtgttcaatatacctttcccatat-aattaccattttccaaact 5204682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 148 - 225
Target Start/End: Original strand, 16240360 - 16240436
Alignment:
Q  148 gtggaattcaaagttggtaggaagtatgatggttattgtgttcaatgtaccttcctcatattaattaccattttccaa 225  Q
    |||||||||||||| | || |||||||   ||||||||||||||||||||||  |||||| |||||||||| ||||||    
T  16240360 gtggaattcaaagtggttaagaagtatagcggttattgtgttcaatgtacctgtctcata-taattaccatattccaa 16240436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 144 - 228
Target Start/End: Complemental strand, 16485198 - 16485113
Alignment:
Q  144 aatagtggaattcaaagttggtaggaagtatgatg--gttattgtgttcaatgtaccttcctcatattaattaccattttccaaact 228  Q
    |||||||||||||||||||| |||| || ||  ||  |||||||||||||| ||| ||| | |||| ||||||||||||||||||||    
T  16485198 aatagtggaattcaaagttgttagggagaatagtggtgttattgtgttcaacgtatctttcccata-taattaccattttccaaact 16485113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 177 - 228
Target Start/End: Original strand, 29027250 - 29027300
Alignment:
Q  177 tggttattgtgttcaatgtaccttcctcatattaattaccattttccaaact 228  Q
    ||||||||||||||||||||||||   ||| |||||||||||||||||||||    
T  29027250 tggttattgtgttcaatgtaccttttccat-ttaattaccattttccaaact 29027300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 225
Target Start/End: Original strand, 2559471 - 2559547
Alignment:
Q  148 gtggaattcaaagttggtaggaagtatgatggttattgtgttcaatgtaccttcctcatattaattaccattttccaa 225  Q
    |||||||||||||| | || |||||||   ||||||||||||||||||||||  | |||| |||||||||| ||||||    
T  2559471 gtggaattcaaagtggttaagaagtatagcggttattgtgttcaatgtacctatcccata-taattaccatattccaa 2559547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1837 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: scaffold1837
Description:

Target: scaffold1837; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 75 - 245
Target Start/End: Complemental strand, 1069 - 900
Alignment:
Q  75 catcagatgaagcatcactcacttggggcacctcagccgtcaagagatcctcgatattgaagcaatcgaaatagtggaattcaaagttggtaggaagtat 174  Q
    ||||||||||||||||||||||||||||||||| ||||||||| ||||| ||||||||||||||||| ||| ||||||||||||||||| ||||||||||    
T  1069 catcagatgaagcatcactcacttggggcaccttagccgtcaaaagatcttcgatattgaagcaatctaaacagtggaattcaaagttgttaggaagtat 970  T
Q  175 gatggttattgtgttcaatgtaccttcctcatattaattaccattttccaaactgttgtgatctgtggtgc 245  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  969 gatggttattgtgttcaatgtaccttccccatattaattaccattttccaaact-ttgtgatctgtggtgc 900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 135; Significance: 2e-70; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 75 - 245
Target Start/End: Original strand, 16771198 - 16771367
Alignment:
Q  75 catcagatgaagcatcactcacttggggcacctcagccgtcaagagatcctcgatattgaagcaatcgaaatagtggaattcaaagttggtaggaagtat 174  Q
    ||||||||||||||||| ||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  16771198 catcagatgaagcatcattcacttggggcacctaagccgtcaaaagatcttcgatattgaagcaatcgaaatagtggaatccaaagttggtaggaagtat 16771297  T
Q  175 gatggttattgtgttcaatgtaccttcctcatattaattaccattttccaaactgttgtgatctgtggtgc 245  Q
    |||||||||||||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||    
T  16771298 gatggttattgtgttcaatgtaccttccccatattaattaccatgttccaaact-ttgtgatctgtggtgc 16771367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 143 - 228
Target Start/End: Original strand, 6667808 - 6667892
Alignment:
Q  143 aaatagtggaattcaaagttggtaggaagtatgatggttattgtgttcaatgtaccttcctcatattaattaccattttccaaact 228  Q
    |||||| ||| ||||||||||||||| |  |   |||||||||||||||||||||||| | |||| ||||||||||||||||||||    
T  6667808 aaataggggatttcaaagttggtagggaaaacagtggttattgtgttcaatgtacctttcccata-taattaccattttccaaact 6667892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 177 - 228
Target Start/End: Complemental strand, 17678134 - 17678084
Alignment:
Q  177 tggttattgtgttcaatgtaccttcctcatattaattaccattttccaaact 228  Q
    ||||||||||||||||||||||||   |||| ||||||||||||||||||||    
T  17678134 tggttattgtgttcaatgtaccttttccata-taattaccattttccaaact 17678084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 225
Target Start/End: Original strand, 14214991 - 14215067
Alignment:
Q  148 gtggaattcaaagttggtaggaagtatgatggttattgtgttcaatgtaccttcctcatattaattaccattttccaa 225  Q
    |||||||||||||| | || |||||||   ||||||||||||||||||||||  | |||| |||||||||| ||||||    
T  14214991 gtggaattcaaagtggttaagaagtatagcggttattgtgttcaatgtacctatcccata-taattaccatattccaa 14215067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 225
Target Start/End: Original strand, 22414864 - 22414940
Alignment:
Q  148 gtggaattcaaagttggtaggaagtatgatggttattgtgttcaatgtaccttcctcatattaattaccattttccaa 225  Q
    |||||||||||||||| || |||||||    |||||||||||||||||||||  | |||| |||||||||| ||||||    
T  22414864 gtggaattcaaagttgttaagaagtatagcagttattgtgttcaatgtacctgtcccata-taattaccatattccaa 22414940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 198
Target Start/End: Original strand, 32004153 - 32004198
Alignment:
Q  153 attcaaagttggtaggaagtatgatggttattgtgttcaatgtacc 198  Q
    ||||||||||| |||| || || |||||||||||||||||||||||    
T  32004153 attcaaagttgttagggagaataatggttattgtgttcaatgtacc 32004198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 135; Significance: 2e-70; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 75 - 245
Target Start/End: Original strand, 27547769 - 27547938
Alignment:
Q  75 catcagatgaagcatcactcacttggggcacctcagccgtcaagagatcctcgatattgaagcaatcgaaatagtggaattcaaagttggtaggaagtat 174  Q
    ||||||||||||||||| ||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  27547769 catcagatgaagcatcattcacttggggcacctaagccgtcaaaagatcttcgatattgaagcaatcgaaatagtggaatccaaagttggtaggaagtat 27547868  T
Q  175 gatggttattgtgttcaatgtaccttcctcatattaattaccattttccaaactgttgtgatctgtggtgc 245  Q
    |||||||||||||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||    
T  27547869 gatggttattgtgttcaatgtaccttccccatattaattaccatgttccaaact-ttgtgatctgtggtgc 27547938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 75 - 245
Target Start/End: Original strand, 25709810 - 25709979
Alignment:
Q  75 catcagatgaagcatcactcacttggggcacctcagccgtcaagagatcctcgatattgaagcaatcgaaatagtggaattcaaagttggtaggaagtat 174  Q
    ||||||||||||||||||||||||||||||||| ||||||||| ||||| ||||||||||||||||| ||| ||||||||||||||||| ||| || |||    
T  25709810 catcagatgaagcatcactcacttggggcaccttagccgtcaaaagatcttcgatattgaagcaatctaaacagtggaattcaaagttgttagaaaatat 25709909  T
Q  175 gatggttattgtgttcaatgtaccttcctcatattaattaccattttccaaactgttgtgatctgtggtgc 245  Q
      |||||||||||||||||||| ||| | |||||||||||||||||| |||||| |||| |||||||||||    
T  25709910 agtggttattgtgttcaatgtatcttacccatattaattaccattttacaaact-ttgtaatctgtggtgc 25709979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 147 - 228
Target Start/End: Complemental strand, 18753436 - 18753356
Alignment:
Q  147 agtggaattcaaagttggtaggaagtatgatggttattgtgttcaatgtaccttcctcatattaattaccattttccaaact 228  Q
    ||||||||||||||||| ||||||| |  ||||||||||||||||||||||||| | |||| ||||||||||||| ||||||    
T  18753436 agtggaattcaaagttgttaggaagaacaatggttattgtgttcaatgtacctttcccata-taattaccatttttcaaact 18753356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 148 - 228
Target Start/End: Complemental strand, 15648736 - 15648657
Alignment:
Q  148 gtggaattcaaagttggtaggaagtatgatggttattgtgttcaatgtaccttcctcatattaattaccattttccaaact 228  Q
    |||||||||||||||| |||| || ||  ||||||||||||||||||||| || | |||| ||||||||||||||||||||    
T  15648736 gtggaattcaaagttgttagggagaatagtggttattgtgttcaatgtacttttcccata-taattaccattttccaaact 15648657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 147 - 228
Target Start/End: Original strand, 16584219 - 16584299
Alignment:
Q  147 agtggaattcaaagttggtaggaagtatgatggttattgtgttcaatgtaccttcctcatattaattaccattttccaaact 228  Q
    |||| ||||||||||||||||| ||     ||||||||||||||||| |||||| | |||| ||||||||||||||||||||    
T  16584219 agtgaaattcaaagttggtagggagagcagtggttattgtgttcaatatacctttcccata-taattaccattttccaaact 16584299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 147 - 228
Target Start/End: Complemental strand, 16611161 - 16611081
Alignment:
Q  147 agtggaattcaaagttggtaggaagtatgatggttattgtgttcaatgtaccttcctcatattaattaccattttccaaact 228  Q
    |||| ||||||||||||||||| ||     ||||||||||||||||| |||||| | ||||| |||||||||||||||||||    
T  16611161 agtgaaattcaaagttggtagggagagcagtggttattgtgttcaatatacctttcccatat-aattaccattttccaaact 16611081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 147 - 228
Target Start/End: Original strand, 28308311 - 28308391
Alignment:
Q  147 agtggaattcaaagttggtaggaagtatgatggttattgtgttcaatgtaccttcctcatattaattaccattttccaaact 228  Q
    |||| ||||||||||||||||| || |   ||||||||||||||||| ||| || | ||||| |||||||||||||||||||    
T  28308311 agtgaaattcaaagttggtagggagaacagtggttattgtgttcaatatacatttcccatat-aattaccattttccaaact 28308391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 228
Target Start/End: Complemental strand, 25501706 - 25501630
Alignment:
Q  149 tggaattcaaagttggtaggaagtatgatggttattgtgttcaatgtaccttcctcatattaattaccattttccaaact 228  Q
    ||||||||||||||| ||||||  |   ||||||||||||||||||||||||   |||| ||||||||||||||||||||    
T  25501706 tggaattcaaagttgataggaaacag--tggttattgtgttcaatgtaccttttccata-taattaccattttccaaact 25501630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 177 - 228
Target Start/End: Complemental strand, 27053950 - 27053900
Alignment:
Q  177 tggttattgtgttcaatgtaccttcctcatattaattaccattttccaaact 228  Q
    ||||||||||||||||||||||||   ||| |||||||||||||||||||||    
T  27053950 tggttattgtgttcaatgtaccttttccat-ttaattaccattttccaaact 27053900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 228
Target Start/End: Original strand, 5991395 - 5991443
Alignment:
Q  179 gttattgtgttcaatgtaccttcctcatattaattaccattttccaaact 228  Q
    ||||||||||||||||||||||   |||| ||||||||||||||||||||    
T  5991395 gttattgtgttcaatgtaccttttccata-taattaccattttccaaact 5991443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 225
Target Start/End: Original strand, 18122412 - 18122488
Alignment:
Q  148 gtggaattcaaagttggtaggaagtatgatggttattgtgttcaatgtaccttcctcatattaattaccattttccaa 225  Q
    |||||||||||||| | || |||||||   ||||||||||||||||||||||  | |||| |||||||||| ||||||    
T  18122412 gtggaattcaaagtggttaagaagtatagcggttattgtgttcaatgtacctatcccata-taattaccatattccaa 18122488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 225
Target Start/End: Complemental strand, 18209929 - 18209853
Alignment:
Q  148 gtggaattcaaagttggtaggaagtatgatggttattgtgttcaatgtaccttcctcatattaattaccattttccaa 225  Q
    |||||||||||||| | || |||||||   ||||||||||||||||||||||  | |||| |||||||||| ||||||    
T  18209929 gtggaattcaaagtggttaagaagtatagcggttattgtgttcaatgtacctatcccata-taattaccatattccaa 18209853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 127; Significance: 1e-65; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 75 - 245
Target Start/End: Complemental strand, 27561236 - 27561067
Alignment:
Q  75 catcagatgaagcatcactcacttggggcacctcagccgtcaagagatcctcgatattgaagcaatcgaaatagtggaattcaaagttggtaggaagtat 174  Q
    ||||||||||||||||||||||||||||||||| ||||||||| | ||| ||||||| ||||||||||||| |||||||||||||| || ||||||||||    
T  27561236 catcagatgaagcatcactcacttggggcaccttagccgtcaaaaaatcttcgatatcgaagcaatcgaaacagtggaattcaaaggtgttaggaagtat 27561137  T
Q  175 gatggttattgtgttcaatgtaccttcctcatattaattaccattttccaaactgttgtgatctgtggtgc 245  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  27561136 gatggttattgtgttcaatgtaccttccccatattaattaccattttccaaact-ttgtgatctgtggtgc 27561067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 75 - 245
Target Start/End: Original strand, 4452598 - 4452767
Alignment:
Q  75 catcagatgaagcatcactcacttggggcacctcagccgtcaagagatcctcgatattgaagcaatcgaaatagtggaattcaaagttggtaggaagtat 174  Q
    ||||||||||||||| ||||||||||||||||| ||||||||| ||||| ||||||||||||||||| ||| ||||||||||||||||| ||||||||||    
T  4452598 catcagatgaagcattactcacttggggcaccttagccgtcaaaagatcttcgatattgaagcaatctaaacagtggaattcaaagttgttaggaagtat 4452697  T
Q  175 gatggttattgtgttcaatgtaccttcctcatattaattaccattttccaaactgttgtgatctgtggtgc 245  Q
    |||||||||| ||||||||||||||||| |||||||||||||||| |||||||| ||||||||||||||||    
T  4452698 gatggttattatgttcaatgtaccttccccatattaattaccattctccaaact-ttgtgatctgtggtgc 4452767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 84 - 228
Target Start/End: Complemental strand, 18904633 - 18904489
Alignment:
Q  84 aagcatcactcacttggggcacctcagccgtcaagagatcctcgatattgaagcaatcgaaatagtggaattcaaagttggtaggaagtatgatggttat 183  Q
    ||||||||||||||||||| |||| ||||||||| |||||   ||||||||||||||| ||| | || ||||||||||||||||||||||| ||||||||    
T  18904633 aagcatcactcacttggggtaccttagccgtcaaaagatctatgatattgaagcaatctaaacattgtaattcaaagttggtaggaagtataatggttat 18904534  T
Q  184 tgtgttcaatgtaccttcctcatattaattaccattttccaaact 228  Q
    ||||||||||||||||||| |||||||||||||||||||||||||    
T  18904533 tgtgttcaatgtaccttccccatattaattaccattttccaaact 18904489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 147 - 228
Target Start/End: Complemental strand, 8200762 - 8200682
Alignment:
Q  147 agtggaattcaaagttggtaggaagtatgatggttattgtgttcaatgtaccttcctcatattaattaccattttccaaact 228  Q
    ||||||||||||||||| |||| |  | | ||||||||||||||||||||||||   |||| ||||||||||||||||||||    
T  8200762 agtggaattcaaagttgatagggaaaacggtggttattgtgttcaatgtaccttttccata-taattaccattttccaaact 8200682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 178 - 245
Target Start/End: Complemental strand, 6960768 - 6960702
Alignment:
Q  178 ggttattgtgttcaatgtaccttcctcatattaattaccattttccaaactgttgtgatctgtggtgc 245  Q
    ||||||| ||||||||||||||||| |||||||||||||||| |||| | | |||| |||||||||||    
T  6960768 ggttattatgttcaatgtaccttccccatattaattaccattgtccaca-ttttgtaatctgtggtgc 6960702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 228
Target Start/End: Complemental strand, 9550425 - 9550349
Alignment:
Q  149 tggaattcaaagttggtaggaagtatgatggttattgtgttcaatgtaccttcctcatattaattaccattttccaaact 228  Q
    ||||||||||||||| |||||| ||  |  ||||||||||||||||||||||   |||| ||||||||||||||||||||    
T  9550425 tggaattcaaagttgataggaaatagta--gttattgtgttcaatgtaccttttccata-taattaccattttccaaact 9550349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 148 - 226
Target Start/End: Complemental strand, 14394170 - 14394092
Alignment:
Q  148 gtggaattcaaagttggt-aggaagtatgatggttattgtgttcaatgtaccttcctcatattaattaccattttccaaa 226  Q
    |||||||||||||||| | ||| || || | ||||||||||||||||||||||| | |||| || |||||||||||||||    
T  14394170 gtggaattcaaagttgattagggagaataacggttattgtgttcaatgtacctttcccata-tatttaccattttccaaa 14394092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 177 - 228
Target Start/End: Complemental strand, 14662466 - 14662417
Alignment:
Q  177 tggttattgtgttcaatgtaccttcctcatattaattaccattttccaaact 228  Q
    ||||||||||||||||||||||||  ||||| ||||||||||||||||||||    
T  14662466 tggttattgtgttcaatgtacctt-ttcata-taattaccattttccaaact 14662417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 225
Target Start/End: Original strand, 6574262 - 6574338
Alignment:
Q  148 gtggaattcaaagttggtaggaagtatgatggttattgtgttcaatgtaccttcctcatattaattaccattttccaa 225  Q
    |||||||||||||| | || |||| ||   ||||||||||||||||||||||  |||||| |||||||||| ||||||    
T  6574262 gtggaattcaaagtcgttaagaagcatagcggttattgtgttcaatgtacctatctcata-taattaccatattccaa 6574338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 225
Target Start/End: Complemental strand, 7086417 - 7086341
Alignment:
Q  148 gtggaattcaaagttggtaggaagtatgatggttattgtgttcaatgtaccttcctcatattaattaccattttccaa 225  Q
    |||||||||||| | | ||||||||||   ||||||||||||||||||||||  | |||| |||||||||| ||||||    
T  7086417 gtggaattcaaaatggttaggaagtatagcggttattgtgttcaatgtacctatcccata-taattaccatattccaa 7086341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 225
Target Start/End: Complemental strand, 11922703 - 11922627
Alignment:
Q  148 gtggaattcaaagttggtaggaagtatgatggttattgtgttcaatgtaccttcctcatattaattaccattttccaa 225  Q
    |||||||||||||| | || |||||||   ||||||||||||||||||||||  | |||| |||||||||| ||||||    
T  11922703 gtggaattcaaagtggttaagaagtatagcggttattgtgttcaatgtacctatcccata-taattaccatattccaa 11922627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 228
Target Start/End: Original strand, 41003277 - 41003325
Alignment:
Q  179 gttattgtgttcaatgtaccttcctcatattaattaccattttccaaact 228  Q
    ||||||||||||||||||||||   |||| ||||||||||||||||||||    
T  41003277 gttattgtgttcaatgtaccttttccata-taattaccattttccaaact 41003325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 228
Target Start/End: Original strand, 41012058 - 41012106
Alignment:
Q  179 gttattgtgttcaatgtaccttcctcatattaattaccattttccaaact 228  Q
    ||||||||||||||||||||||   |||| ||||||||||||||||||||    
T  41012058 gttattgtgttcaatgtaccttttccata-taattaccattttccaaact 41012106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 114; Significance: 8e-58; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 84 - 245
Target Start/End: Complemental strand, 20374917 - 20374757
Alignment:
Q  84 aagcatcactcacttggggcacctcagccgtcaagagatcctcgatattgaagcaatcgaaatagtggaattcaaagttggtaggaagtatgatggttat 183  Q
    |||||||||||||||| || |||| ||||||| | ||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  20374917 aagcatcactcacttgaggtaccttagccgtccaaagatcttcgatattgaagcaatctaaacagtggaattcaaagttggtaggaagtatgatggttat 20374818  T
Q  184 tgtgttcaatgtaccttcctcatattaattaccattttccaaactgttgtgatctgtggtgc 245  Q
    ||||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||    
T  20374817 tgtgttcaatgtacctttcccatattaattaccattttccaaact-ttgtgatctgtggtgc 20374757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 224
Target Start/End: Complemental strand, 349400 - 349354
Alignment:
Q  178 ggttattgtgttcaatgtaccttcctcatattaattaccattttcca 224  Q
    ||||||| ||||||||||||||||| |||||||||||||||| ||||    
T  349400 ggttattatgttcaatgtaccttccccatattaattaccattgtcca 349354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 228
Target Start/End: Complemental strand, 24960372 - 24960324
Alignment:
Q  179 gttattgtgttcaatgtaccttcctcatattaattaccattttccaaact 228  Q
    ||||||||||||||||||||||   |||| ||||||||||||||||||||    
T  24960372 gttattgtgttcaatgtaccttttccata-taattaccattttccaaact 24960324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 228
Target Start/End: Original strand, 28848795 - 28848843
Alignment:
Q  179 gttattgtgttcaatgtaccttcctcatattaattaccattttccaaact 228  Q
    ||||||||||||||||||||||   |||| ||||||||||||||||||||    
T  28848795 gttattgtgttcaatgtaccttttccata-taattaccattttccaaact 28848843  T

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Target: chr1 (Bit Score: 99; Significance: 7e-49; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 75 - 245
Target Start/End: Original strand, 13456637 - 13456806
Alignment:
Q  75 catcagatgaagcatcactcacttggggcacctcagccgtcaagagatcctcgatattgaagcaatcgaaatagtggaattcaaagttggtaggaagtat 174  Q
    ||||||||||||||||||||||||||||||||| ||| ||||| ||||| ||||||||||||||||| ||| ||||||||||||||||| ||| || |||    
T  13456637 catcagatgaagcatcactcacttggggcaccttagctgtcaaaagatcttcgatattgaagcaatctaaacagtggaattcaaagttgttagaaaatat 13456736  T
Q  175 gatggttattgtgttcaatgtaccttcctcatattaattaccattttccaaactgttgtgatctgtggtgc 245  Q
      |||||||||||||||||||| ||| | |||||||||||||||||| |||||| |||| |||||||||||    
T  13456737 agtggttattgtgttcaatgtatctttcccatattaattaccatttttcaaact-ttgtaatctgtggtgc 13456806  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 148 - 228
Target Start/End: Original strand, 13468654 - 13468733
Alignment:
Q  148 gtggaattcaaagttggtaggaagtatgatggttattgtgttcaatgtaccttcctcatattaattaccattttccaaact 228  Q
    ||||||||||||||||||||| || ||  ||||||||||||||||| |||||| | |||| ||||||||||||||||||||    
T  13468654 gtggaattcaaagttggtagggagaatagtggttattgtgttcaatatacctttcccata-taattaccattttccaaact 13468733  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 147 - 227
Target Start/End: Original strand, 2389543 - 2389622
Alignment:
Q  147 agtggaattcaaagttggtaggaagtatgatggttattgtgttcaatgtaccttcctcatattaattaccattttccaaac 227  Q
    ||||||||||||||||| |||  || | | ||||||||||||||||||||||||   |||| |||||||||||||||||||    
T  2389543 agtggaattcaaagttgatagagagaacggtggttattgtgttcaatgtaccttttccata-taattaccattttccaaac 2389622  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 228
Target Start/End: Original strand, 31544949 - 31544997
Alignment:
Q  179 gttattgtgttcaatgtaccttcctcatattaattaccattttccaaact 228  Q
    ||||||||||||||||||||||   |||| ||||||||||||||||||||    
T  31544949 gttattgtgttcaatgtaccttttccata-taattaccattttccaaact 31544997  T

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Target: scaffold0031 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 75 - 225
Target Start/End: Complemental strand, 15773 - 15623
Alignment:
Q  75 catcagatgaagcatcactcacttggggcacctcagccgtcaagagatcctcgatattgaagcaatcgaaatagtggaattcaaagttggtaggaagtat 174  Q
    ||||||||||| ||||||||| ||||||||||| | | ||||  || ||  ||||||  |||||||  |  |||||||||||||||||| ||||||  ||    
T  15773 catcagatgaaacatcactcatttggggcaccttaactgtcagaagttctccgatatcaaagcaatataggtagtggaattcaaagttgttaggaaacat 15674  T
Q  175 gatggttattgtgttcaatgtaccttcctcatattaattaccattttccaa 225  Q
      ||||||| |||||||||||||||||| ||||||||||||||| ||||||    
T  15673 agtggttatggtgttcaatgtaccttccccatattaattaccatgttccaa 15623  T

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Target: scaffold0016 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 147 - 228
Target Start/End: Original strand, 20575 - 20655
Alignment:
Q  147 agtggaattcaaagttggtaggaagtatgatggttattgtgttcaatgtaccttcctcatattaattaccattttccaaact 228  Q
    ||||||||||||||||| |||| || | | ||||||||||||||||||||||||   |||| ||||||||||||||||||||    
T  20575 agtggaattcaaagttgatagggagaacggtggttattgtgttcaatgtaccttttccata-taattaccattttccaaact 20655  T

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Target: scaffold0389 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0389
Description:

Target: scaffold0389; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 147 - 225
Target Start/End: Original strand, 4763 - 4840
Alignment:
Q  147 agtggaattcaaagttggtaggaagtatgatggttattgtgttcaatgtaccttcctcatattaattaccattttccaa 225  Q
    |||||| ||||||||||||||| || ||  ||||||||||||||||| |||||| | |||| |||||||||||||||||    
T  4763 agtggagttcaaagttggtagggagaatagtggttattgtgttcaatatacctttcccata-taattaccattttccaa 4840  T

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Target: scaffold0605 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0605
Description:

Target: scaffold0605; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 147 - 228
Target Start/End: Complemental strand, 3880 - 3800
Alignment:
Q  147 agtggaattcaaagttggtaggaagtatgatggttattgtgttcaatgtaccttcctcatattaattaccattttccaaact 228  Q
    ||||||||||||||||||||||    |   ||||||||||||||||||||||||   |||| ||||||||||||||||||||    
T  3880 agtggaattcaaagttggtaggggaaacagtggttattgtgttcaatgtaccttttccata-taattaccattttccaaact 3800  T

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Target: scaffold0046 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0046
Description:

Target: scaffold0046; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 148 - 225
Target Start/End: Original strand, 51848 - 51924
Alignment:
Q  148 gtggaattcaaagttggtaggaagtatgatggttattgtgttcaatgtaccttcctcatattaattaccattttccaa 225  Q
    |||||||||||||||| || ||||||| | ||||||||||||||||| ||||  | |||| |||||||||| ||||||    
T  51848 gtggaattcaaagttgttaagaagtataacggttattgtgttcaatgcacctgtcccata-taattaccatattccaa 51924  T

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Target: scaffold0015 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 147 - 228
Target Start/End: Original strand, 172708 - 172787
Alignment:
Q  147 agtggaattcaaagttggtaggaagtatgatggttattgtgttcaatgtaccttcctcatattaattaccattttccaaact 228  Q
    ||||||||||||| |||||||| |  |  |||||||||||||||||||||||||   |||| ||||||||||||||||||||    
T  172708 agtggaattcaaaattggtagggaa-acaatggttattgtgttcaatgtaccttttccata-taattaccattttccaaact 172787  T

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Target: scaffold0083 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 177 - 228
Target Start/End: Original strand, 20559 - 20609
Alignment:
Q  177 tggttattgtgttcaatgtaccttcctcatattaattaccattttccaaact 228  Q
    ||||||||||||||||||||||||   |||| ||||||||||||||||||||    
T  20559 tggttattgtgttcaatgtaccttttccata-taattaccattttccaaact 20609  T

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Target: scaffold0404 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0404
Description:

Target: scaffold0404; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 225
Target Start/End: Original strand, 13157 - 13233
Alignment:
Q  148 gtggaattcaaagttggtaggaagtatgatggttattgtgttcaatgtaccttcctcatattaattaccattttccaa 225  Q
    |||||||||||||| | || |||||||   ||||||||||||||||||||||  | |||| |||||||||| ||||||    
T  13157 gtggaattcaaagtggttaagaagtatagcggttattgtgttcaatgtacctatcccata-taattaccatattccaa 13233  T

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Target: scaffold0023 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 228
Target Start/End: Complemental strand, 141506 - 141426
Alignment:
Q  147 agtggaattcaaagttggtaggaagtatgatggttattgtgttcaatgtaccttcctcatattaattaccattttccaaact 228  Q
    |||||||||||||||||||||     |  |||||||||||||||||||| ||||   |||| ||||||||||||||||||||    
T  141506 agtggaattcaaagttggtagaggaaacaatggttattgtgttcaatgtgccttttccata-taattaccattttccaaact 141426  T

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Target: scaffold0009 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 200
Target Start/End: Original strand, 155275 - 155331
Alignment:
Q  144 aatagtggaattcaaagttggtaggaagtatgatggttattgtgttcaatgtacctt 200  Q
    |||||||| ||||||||||| |||| || ||   |||||||||||||||||||||||    
T  155275 aatagtgggattcaaagttgttagggagaatagcggttattgtgttcaatgtacctt 155331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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