View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1252_low_24 (Length: 291)
Name: NF1252_low_24
Description: NF1252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1252_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 59; Significance: 5e-25; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 49 - 111
Target Start/End: Complemental strand, 18246350 - 18246288
Alignment:
| Q |
49 |
caagaatatacaacacatacatttattcatctcatgtcacaaatttctcaagttacattcctt |
111 |
Q |
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| T |
18246350 |
caagaaaatacaacacatacatttattcatctcatgtcacaaatttctcaagttacattcctt |
18246288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 173 - 223
Target Start/End: Complemental strand, 18246226 - 18246176
Alignment:
| Q |
173 |
ctaatcctcaagattaattcctcattctttcatgagtaacatcatagtttt |
223 |
Q |
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| T |
18246226 |
ctaatcctcaagattaattcctcattctttcatgagtaacatcatagtttt |
18246176 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 49 - 99
Target Start/End: Original strand, 18256144 - 18256194
Alignment:
| Q |
49 |
caagaatatacaacacatacatttattcatctcatgtcacaaatttctcaa |
99 |
Q |
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|||||| ||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
18256144 |
caagaaaataaaacacatacatttattcatctcatgtcacaaatttctcaa |
18256194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 96
Target Start/End: Complemental strand, 18253448 - 18253408
Alignment:
| Q |
56 |
atacaacacatacatttattcatctcatgtcacaaatttct |
96 |
Q |
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| T |
18253448 |
atacaacatgtacgtttattcatctcatgtcacaaatttct |
18253408 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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