View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1252_low_26 (Length: 264)
Name: NF1252_low_26
Description: NF1252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1252_low_26 |
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Alignment Details
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 11 - 237
Target Start/End: Complemental strand, 40961123 - 40960897
Alignment:
| Q |
11 |
cacagacaccgcatcacaagaagcagaccaagaatgaccacaggcgatacattccagctgaacaagcagagcaacaatcaaaacccgggtcattaaaagt |
110 |
Q |
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| T |
40961123 |
cacagacaccgcatcacaagaggcagaccaagaatgaccacaggcgatacattccagctgaacaagcagagcaacaatcaaaacccgggtcattaaaagt |
40961024 |
T |
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| Q |
111 |
gcattagatgagtttttaaattttaattaaatatcagtaaagcattaaggtgcaaaccatatatcggtcagcaagtcctgcgcgaataatatcccttaca |
210 |
Q |
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| T |
40961023 |
gcattagatgagtttttaaattttaattaaatatcagtaaagcattaaggtgcaaaccatatatcggtcagcaagtcctgcacgaataatatcccttaca |
40960924 |
T |
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| Q |
211 |
cccactttacgctctgtgcaaagtttg |
237 |
Q |
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| T |
40960923 |
cccactttacgctctgtgcaaagtttg |
40960897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 11 - 206
Target Start/End: Complemental strand, 40947929 - 40947740
Alignment:
| Q |
11 |
cacagacaccgcatcacaagaagcagaccaagaatgaccacaggcgatacattccagctgaacaagcagagcaacaatcaaaacccgggtcattaaaagt |
110 |
Q |
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||||||||||||||||| ||| |||||||| ||||||||||| || || ||||||||||||||||||||||||| ||| ||||| |||| |||| | |
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| T |
40947929 |
cacagacaccgcatcacgagaggcagaccaggaatgaccacaagctatgcattccagctgaacaagcagagcaaaaat-taaaccgaagtcacaaaaact |
40947831 |
T |
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| Q |
111 |
gcattagatgagtttttaaattttaattaaatatcagtaaagcattaaggtgcaaaccatatatcggtcagcaagtcctgcgcgaataatatccct |
206 |
Q |
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| T |
40947830 |
acaggagatga-atttgatatt----tgaaatatcagtaaagcattaaggcgctgaccatatatcggtcagcatatcctgcacggataatatccct |
40947740 |
T |
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