View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1252_low_3 (Length: 612)
Name: NF1252_low_3
Description: NF1252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1252_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 453; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 30 - 601
Target Start/End: Original strand, 48076786 - 48077356
Alignment:
| Q |
30 |
agcagaaatggcgaatgttatgcagaattgcaggaagctgccaacttgttcaaccctcaactcgttgacttattgggtcaactcaactctgaaattggtt |
129 |
Q |
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| T |
48076786 |
agcagaaatggcgaatgttatgcagaattgcaggaagctgccaatttgttcaaccctcaactcgttgacttattgggtcaactcaactctgaaattggtt |
48076885 |
T |
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| Q |
130 |
ctgatgtctttatttctgcaaatgcctttgcaatgaatatggatttcattggtaatccagaagcatacggtatatatatgtccttcaacctcacttttta |
229 |
Q |
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| T |
48076886 |
ctgatgtctttatttctgcaaatgcctttgcaatgaatatggatttcattggtaatccagaagcatacggtatatacatgtccttcaacctcacttttta |
48076985 |
T |
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| Q |
230 |
ttgtaccgtatttctaacatacacnnnnnnnnnnnnnnnnnnnnnnaagagactaacaactaaattcacataaactaaatacaaatataacaaacatatc |
329 |
Q |
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| T |
48076986 |
ttgtaccgtatttctaatatacacatttttattttatttta-----aagagactaacaactaaattcacataaactaaatacaaatataacaaacatatc |
48077080 |
T |
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| Q |
330 |
aaatcggtcttttacgatgtgaacttaaccatggatattcctgaattttaatgggtaacaaatatttcaaagactaaatggagaatgaaactgggtgaaa |
429 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48077081 |
aaatcggtcttttacgatgtgaacttcaccatggatattcctgaattttaatgggtaacaaatatttcaaagactaaatggagaatgaaactgggtgaaa |
48077180 |
T |
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| Q |
430 |
tttggaaaatattggtgtgagaccatatttaattttcccatcgacatacatatcatatcatgagtataaagtggaaataaataatttactctgtcc---- |
525 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48077181 |
tttggaaaatattggtgt--gaccatatttaattttcccatcgacatacatatcatatcatgagtataaagtggaaataaataatttactctgtccaatc |
48077278 |
T |
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| Q |
526 |
--aatccaaatccaaatgaagccaccacttgcagatcacgttgaatggggaaaacagtttccagggaccacacttcat |
601 |
Q |
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| T |
48077279 |
caaatccaaatccaaatgaagccaccacttgcagatcacgttgaatggggaaaacagtttccaggaaccacacttcat |
48077356 |
T |
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