View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1252_low_33 (Length: 226)
Name: NF1252_low_33
Description: NF1252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1252_low_33 |
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Alignment Details
Target: chr1 (Bit Score: 87; Significance: 7e-42; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 10397325 - 10397202
Alignment:
| Q |
1 |
gaagaatcctctgacacaatcccacaannnnnnnatccacatgaatgtttcctcattaagtgtcactacttccactccccttcattcaatcattattcct |
100 |
Q |
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| T |
10397325 |
gaagaatcctctgacaccatcccacaatttttttatccacatgaatgtttcctcattaaacgtcactacttccactccccttcattcaatcattattcct |
10397226 |
T |
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| Q |
101 |
tcatcattcctcgaaacatcttat |
124 |
Q |
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| T |
10397225 |
tcatcattcctcgtaacatcttat |
10397202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 10407545 - 10407422
Alignment:
| Q |
1 |
gaagaatcctctgacacaatcccacaannnnnnnatccacatgaatgtttcctcattaagtgtcactacttccactccccttcattcaatcattattcct |
100 |
Q |
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|||||| |||||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
10407545 |
gaagaaccctctgacaccatcccacaatttttttatccacatgaatgtttcctcattaaacgtcactacttccactccccttcattcaatcattattcct |
10407446 |
T |
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| Q |
101 |
tcatcattcctcgaaacatcttat |
124 |
Q |
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|||||||||||||||||||||||| |
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| T |
10407445 |
tcatcattcctcgaaacatcttat |
10407422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 4 - 124
Target Start/End: Complemental strand, 10402187 - 10402067
Alignment:
| Q |
4 |
gaatcctctgacacaatcccacaannnnnnnatccacatgaatgtttcctcattaagtgtcactacttccactccccttcattcaatcattattccttca |
103 |
Q |
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||||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |
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| T |
10402187 |
gaatcctctgacatcatcccacaatttttttatccacatgaatgtttcctcattaaacgtcactacttccactccccttcatttaatcattattccttca |
10402088 |
T |
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| Q |
104 |
tcattcctcgaaacatcttat |
124 |
Q |
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|||||||||| |||||||||| |
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| T |
10402087 |
tcattcctcgtaacatcttat |
10402067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 124
Target Start/End: Complemental strand, 10429615 - 10429527
Alignment:
| Q |
36 |
tccacatgaatgtttcctcattaagtgtcactacttccactccccttcattcaatcattattccttcatcattcctcgaaacatcttat |
124 |
Q |
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|||||||||||||||||||||||| |||| |||| ||||| |||||||||| || ||| |||| | |||||| | |||||||||| |
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| T |
10429615 |
tccacatgaatgtttcctcattaaacttcaccactttcactcgacttcattcaaccactatgacttccttattcctggtaacatcttat |
10429527 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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