View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1252_low_4 (Length: 536)

Name: NF1252_low_4
Description: NF1252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1252_low_4
NF1252_low_4
[»] chr3 (9 HSPs)
chr3 (97-528)||(24930345-24930776)
chr3 (353-528)||(24976357-24976532)
chr3 (167-293)||(24976190-24976316)
chr3 (365-465)||(24991109-24991209)
chr3 (365-465)||(25014646-25014746)
chr3 (365-465)||(25013525-25013625)
chr3 (365-435)||(21794625-21794695)
chr3 (376-438)||(25027510-25027572)
chr3 (353-386)||(42028831-42028864)
[»] scaffold0777 (3 HSPs)
scaffold0777 (352-528)||(1411-1587)
scaffold0777 (204-352)||(1214-1364)
scaffold0777 (122-163)||(705-746)
[»] chr5 (2 HSPs)
chr5 (178-269)||(4943868-4943959)
chr5 (395-462)||(26104443-26104510)
[»] chr4 (1 HSPs)
chr4 (353-387)||(21261462-21261496)
[»] chr2 (1 HSPs)
chr2 (353-386)||(28219574-28219607)


Alignment Details
Target: chr3 (Bit Score: 420; Significance: 0; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 97 - 528
Target Start/End: Complemental strand, 24930776 - 24930345
Alignment:
Q  97 gtataaatgtatgaaacagagttggtgtatgaatgattggaaataacaaaattgacaacgtaaaaacaaaaagagttacccctaaaatagtggaatcaaa 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  24930776 gtataaatgtatgaaacagagttggtgtatgaatgattggaaataacaaaattgacaacgtgaaaacaaaaagagttacccctaaaatagtggaatcaaa 24930677  T
Q  197 aatgttttctctttttgcataaatgcccatgcttccatttcttcccacaaaggtagcagaagttgcatttacacctgagaaaaattgagctagtattgtt 296  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24930676 aatgttttctctttttgcataaatgcccatgcttccatttcttcccacagaggtagcagaagttgcatttacacctgagaaaaattgagctagtattgtt 24930577  T
Q  297 agtctcttttatcatatgatgtaataatgaatcacatgttaaatgagttagggttagaatacaaaacaaacctgcatttcatgtgttcacatccactact 396  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24930576 agtctcttttatcatatgatgtaataatgaatcacatgttgaatgagttagggttagaatacaaaacaaacctgcatttcatgtgttcacatccactact 24930477  T
Q  397 tctcttgacatagatagagcaatttggacatctcttccatttatttattttagctaactccaaaaacttatcatccaaatctatttcatttttatcgcgt 496  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24930476 tctcttgacatagatagagcaatttggacatctcttccatttatttattttagctaactccaaaaacttatcatccaaatctatttcatttttatcgcgt 24930377  T
Q  497 ttcaaatcttgaaactcctgacaattcatctc 528  Q
    ||||||||||||||||||||||||||||||||    
T  24930376 ttcaaatcttgaaactcctgacaattcatctc 24930345  T

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Target: chr3; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 353 - 528
Target Start/End: Original strand, 24976357 - 24976532
Alignment:
Q  353 gaatacaaaacaaacctgcatttcatgtgttcacatccactacttctcttgacatagatagagcaatttggacatctcttccatttatttattttagcta 452  Q
    |||||||||| ||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||| ||||||| ||| || ||| | ||||| |    
T  24976357 gaatacaaaataaacctgcatttcatgtgttcacatccatcacttctcttgacatagatagagcaatttgggcatctctgccacttctttctgttagcca 24976456  T
Q  453 actccaaaaacttatcatccaaatctatttcatttttatcgcgtttcaaatcttgaaactcctgacaattcatctc 528  Q
    |||||||||| |||||||||||||||  ||| ||||||   |||||||||||||||||||||||||||||||||||    
T  24976457 actccaaaaatttatcatccaaatcttgttcctttttaggacgtttcaaatcttgaaactcctgacaattcatctc 24976532  T

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Target: chr3; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 167 - 293
Target Start/End: Original strand, 24976190 - 24976316
Alignment:
Q  167 aagagttacccctaaaatagtggaatcaaaaatgttttctctttttgcataaatgcccatgcttccatttcttcccacaaaggtagcagaagttgcattt 266  Q
    |||||||||| ||||||||| |||||||  ||| ||||||||| | ||||||||||||||||||||||| || ||||||| ||||||||||||| |||||    
T  24976190 aagagttacctctaaaataggggaatcatcaatattttctcttctcgcataaatgcccatgcttccattcctccccacaatggtagcagaagttacattt 24976289  T
Q  267 acacctgagaaaaattgagctagtatt 293  Q
    |||||||| |||||| |||||||||||    
T  24976290 acacctgaaaaaaatggagctagtatt 24976316  T

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Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 365 - 465
Target Start/End: Complemental strand, 24991209 - 24991109
Alignment:
Q  365 aacctgcatttcatgtgttcacatccactacttctcttgacatagatagagcaatttggacatctcttccatttatttattttagctaactccaaaaact 464  Q
    ||||||||| ||||||||||||||||| || ||||||  ||||  ||||| || ||||||||||||||||| || | | ||||||| |||||||||||||    
T  24991209 aacctgcatctcatgtgttcacatccagtagttctctgtacatgcatagaacattttggacatctcttccacttttctcttttagccaactccaaaaact 24991110  T
Q  465 t 465  Q
    |    
T  24991109 t 24991109  T

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Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 365 - 465
Target Start/End: Complemental strand, 25014746 - 25014646
Alignment:
Q  365 aacctgcatttcatgtgttcacatccactacttctcttgacatagatagagcaatttggacatctcttccatttatttattttagctaactccaaaaact 464  Q
    ||||||||| ||||||||||||||||| || ||||||  ||||  ||||| || ||||||||||||||||| || | | ||||||| |||||||||||||    
T  25014746 aacctgcatctcatgtgttcacatccagtagttctctgtacatgcatagaacattttggacatctcttccacttttctcttttagccaactccaaaaact 25014647  T
Q  465 t 465  Q
    |    
T  25014646 t 25014646  T

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Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 365 - 465
Target Start/End: Complemental strand, 25013625 - 25013525
Alignment:
Q  365 aacctgcatttcatgtgttcacatccactacttctcttgacatagatagagcaatttggacatctcttccatttatttattttagctaactccaaaaact 464  Q
    ||||||||| ||||||||||||||||| || ||||||  ||||  ||||| || ||||||||||| ||||| || | | ||||||| |||||||||||||    
T  25013625 aacctgcatctcatgtgttcacatccagtagttctctgtacatgcatagaacattttggacatcttttccacttttctcttttagccaactccaaaaact 25013526  T
Q  465 t 465  Q
    |    
T  25013525 t 25013525  T

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Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 365 - 435
Target Start/End: Original strand, 21794625 - 21794695
Alignment:
Q  365 aacctgcatttcatgtgttcacatccactacttctcttgacatagatagagcaatttggacatctcttcca 435  Q
    ||||||||  ||||||| | ||||||| || |||||| |||||||||||||||| |||||||||| |||||    
T  21794625 aacctgcacatcatgtgattacatccattaattctctcgacatagatagagcaacttggacatcttttcca 21794695  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 376 - 438
Target Start/End: Complemental strand, 25027572 - 25027510
Alignment:
Q  376 catgtgttcacatccactacttctcttgacatagatagagcaatttggacatctcttccattt 438  Q
    ||||||||||||||||| | |||||| |||||  |||||||| || |||||||||| ||||||    
T  25027572 catgtgttcacatccaccatttctctggacatgcatagagcatttgggacatctctgccattt 25027510  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 386
Target Start/End: Complemental strand, 42028864 - 42028831
Alignment:
Q  353 gaatacaaaacaaacctgcatttcatgtgttcac 386  Q
    |||||||||| |||||||||||||||||||||||    
T  42028864 gaatacaaaataaacctgcatttcatgtgttcac 42028831  T

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Target: scaffold0777 (Bit Score: 129; Significance: 2e-66; HSPs: 3)
Name: scaffold0777
Description:

Target: scaffold0777; HSP #1
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 352 - 528
Target Start/End: Original strand, 1411 - 1587
Alignment:
Q  352 agaatacaaaacaaacctgcatttcatgtgttcacatccactacttctcttgacatagatagagcaatttggacatctcttccatttatttattttagct 451  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| || ||| ||||||||    
T  1411 agaatacaaaacaaacctgcatttcatgtgttcacatccactccttctcttgacatagatagagcaatttggacatctctgccacttgtttcttttagct 1510  T
Q  452 aactccaaaaacttatcatccaaatctatttcatttttatcgcgtttcaaatcttgaaactcctgacaattcatctc 528  Q
    |||| ||||||||||||||||||||||| ||||||| ||| | |||||||||||||||| |||||||| ||||||||    
T  1511 aacttcaaaaacttatcatccaaatctacttcatttgtattgtgtttcaaatcttgaaattcctgacagttcatctc 1587  T

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Target: scaffold0777; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 204 - 352
Target Start/End: Original strand, 1214 - 1364
Alignment:
Q  204 tctctttttgcataaatgcccatgcttccatttcttcccacaaaggtagcagaagttgcatttacacctgagaaaaa-ttgagctagtattgttag-tct 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |||||||| ||||||||| | |    
T  1214 tctctttttgcataaatgcccatgcttccatttcttcccacaaaggtagcagaagttgcatttacacctaaaaaaaatttgagctaatattgttagttat 1313  T
Q  302 cttttatcatatgatgtaataatgaatcacatgttaaatgagttagggtta 352  Q
     |||||||||||||||||||||||||||||||||||||||| | |||||||    
T  1314 tttttatcatatgatgtaataatgaatcacatgttaaatgattaagggtta 1364  T

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Target: scaffold0777; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 122 - 163
Target Start/End: Original strand, 705 - 746
Alignment:
Q  122 tgtatgaatgattggaaataacaaaattgacaacgtaaaaac 163  Q
    |||||||||||||||||||||||||||||||||||| |||||    
T  705 tgtatgaatgattggaaataacaaaattgacaacgtcaaaac 746  T

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Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 178 - 269
Target Start/End: Original strand, 4943868 - 4943959
Alignment:
Q  178 ctaaaatagtggaatcaaaaatgttttctctttttgcataaatgcccatgcttccatttcttcccacaaaggtagcagaagttgcatttaca 269  Q
    ||||||||| |||||||  ||| |||||||| ||||||||||||| |||||||||||||||| |||||  ||||||||||||| ||||||||    
T  4943868 ctaaaataggggaatcatcaatattttctctctttgcataaatgctcatgcttccatttctttccacattggtagcagaagttacatttaca 4943959  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 395 - 462
Target Start/End: Complemental strand, 26104510 - 26104443
Alignment:
Q  395 cttctcttgacatagatagagcaatttggacatctcttccatttatttattttagctaactccaaaaa 462  Q
    ||||||| |||||| ||||||||  |||||||||||| |||||| | | ||||||| |||||||||||    
T  26104510 cttctctggacatacatagagcatcttggacatctctgccatttttctcttttagccaactccaaaaa 26104443  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 353 - 387
Target Start/End: Complemental strand, 21261496 - 21261462
Alignment:
Q  353 gaatacaaaacaaacctgcatttcatgtgttcaca 387  Q
    |||||||||| ||||||||||||||||||||||||    
T  21261496 gaatacaaaataaacctgcatttcatgtgttcaca 21261462  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 386
Target Start/End: Original strand, 28219574 - 28219607
Alignment:
Q  353 gaatacaaaacaaacctgcatttcatgtgttcac 386  Q
    |||||||||| |||||||||||||||||||||||    
T  28219574 gaatacaaaataaacctgcatttcatgtgttcac 28219607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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