View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1252_low_7 (Length: 440)
Name: NF1252_low_7
Description: NF1252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1252_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 102 - 430
Target Start/End: Complemental strand, 39080125 - 39079792
Alignment:
| Q |
102 |
tcttcattaaattaattaatttataactaacaaatcgtaatttattcatttatatgttttaaagctaactaaacagccgtctggtttctcacaatgaaat |
201 |
Q |
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| T |
39080125 |
tcttcattaaattaattaatttataactaacaaatcgtaatttattcatttatatgttttaaagctaactaaacagccgtctggtttctcaccatgaaat |
39080026 |
T |
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| Q |
202 |
taaagattgccgaaagcataaatttagagagtaatattatttgttgagttgagcctgtg-----atgtagattgtctataatttatatttaatttgttta |
296 |
Q |
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| T |
39080025 |
taaagattgccgaaagcataaatttagagagtaatattatttgttgagttgagcctgtgatgtgatgtagattgtctataatttatatttaatttgttta |
39079926 |
T |
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| Q |
297 |
cggtcnnnnnnnataactgggaaatgtatttttattagaaagataatttatttagagtgcattaaacgtctttgaaaacaatgagaagccggccttgcgt |
396 |
Q |
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| T |
39079925 |
cggtctttttttataactgggaaatgtatttttattagaaagataatttatttagagtgcattaaacgtctttgaaaacaatgagaagccggccttgcgt |
39079826 |
T |
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| Q |
397 |
ttattgatcggagttcacagattctttcttcatc |
430 |
Q |
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| T |
39079825 |
ttattgatcggagttcacagattctttcttcatc |
39079792 |
T |
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