View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1252_low_8 (Length: 431)
Name: NF1252_low_8
Description: NF1252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1252_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 1 - 421
Target Start/End: Complemental strand, 35932946 - 35932526
Alignment:
| Q |
1 |
tatagcatataagctagtattatcaaagtaaaattgttttgtaaccaccaatctatctgcgtttacatcgtttcttcagtagtttatatcattttttcat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
35932946 |
tatagcatataagctagtattatcaaagtaaaattgttttgtaaccaccaatctatctgcgtttacatcgtttcttcagtagtttatatcgttttttcat |
35932847 |
T |
|
| Q |
101 |
atgtgcatttgagtttatttataactagattataactaccactgttttcctactaagttcaacaagagtttttaaaatacaaactaaacacatgctaaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35932846 |
atgtgcatttgagtttatttataactagattataactaccactgttttcctactaagttcaacaagagtttttaaaatacaaactaaacacatgctaaca |
35932747 |
T |
|
| Q |
201 |
ttcattcaacacatcaacaaactctataacatcgtttctaccttataaaataatttactaccttttttcgaatacagcaaaatcaattcctaactgcagt |
300 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35932746 |
ttcattcaacacatcaacaaactctataacatcatttctaccttataaaataatttactaccttttttcgaatacagcaaaatcaattcctaactgcagc |
35932647 |
T |
|
| Q |
301 |
tggtgaaccccatgtaatagcatataaaaatctcaaatcaatgctttctactacatccacattacatataggtgaggaccacgatattttggcaagcaca |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35932646 |
tggtgaaccccatgtaatagcatataaaaatctcaaatcaatgctttctactacatccacattacatataggtgaggaccacgatattttggcaagcaca |
35932547 |
T |
|
| Q |
401 |
aaacgaccctcgttatctctg |
421 |
Q |
| |
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||||||||||||||||||||| |
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| T |
35932546 |
aaacgaccctcgttatctctg |
35932526 |
T |
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