View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1252_low_9 (Length: 414)
Name: NF1252_low_9
Description: NF1252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1252_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 29 - 402
Target Start/End: Original strand, 38729310 - 38729683
Alignment:
| Q |
29 |
aactatctgaaaagaatttatgttacaattgattttaattgtttaaggagtaagtttttaaggtaggaggtggctgcaatattaggtttaggtcagaaaa |
128 |
Q |
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| T |
38729310 |
aactatctgaaaagaatttatgttacaattgattttaattgtttaaggagtaagtttttaaggtaggaggtggctacaatattaggtttaggtcagaaaa |
38729409 |
T |
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| Q |
129 |
tttgagagacttgggaaccaactggtcatggctgtctgctcttaattggtgtaccaactaccacctattttaagaaccgtgtcaccgtgtggtctttctt |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38729410 |
tttgagagacttgggaaccaactggtcatggctgtctgctcttaattggtgtaccaactaccacctattttaagaaccgtgtcaccgtgtggtctttctt |
38729509 |
T |
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| Q |
229 |
tctaaatgaaaaagttgctatttgcacctcaaaaattgatgaatctcagtgttagttacgcgtatggtataagttgactgtttgaaattaaatgtttgac |
328 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38729510 |
tctaaatgaaaaagttgctatttgcacctccaaaattgatgaatctcagtgttagttacgcgtatggtataagttgactgtttgaaattaaatgtttgac |
38729609 |
T |
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| Q |
329 |
tcagtttactgtaagcttgtgtactttacagctccgcgcggnnnnnnnctattatagaaagtttttacgatatt |
402 |
Q |
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| T |
38729610 |
tcagtttactgaatgcttgtgtactttacagctccgcgcggtttttttctattatagaaagtttttacgatatt |
38729683 |
T |
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