View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12530_high_3 (Length: 369)
Name: NF12530_high_3
Description: NF12530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12530_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 11 - 353
Target Start/End: Complemental strand, 47623628 - 47623286
Alignment:
| Q |
11 |
caaaggagttaggttcttctatcttgggatctcctctgtacaagtttcccttagacctaaagtacattaatgacatgcaatcagttgatcataacaaaca |
110 |
Q |
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| T |
47623628 |
caaaggagttaggttcttctatcttgggatctcctctgtacaagtttcccttagacctaaagtacattaatgacatgcaatcagtcgatcataacaaaca |
47623529 |
T |
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| Q |
111 |
cctaaaatttctgactgtcaactgtatttgttatatggacaaggtctctccattggtttatctgatagtgctttacttccatatgatggttcagttaaca |
210 |
Q |
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| T |
47623528 |
cctaaaatttctgactgtcaactgtatttgttatatggacaaggtctctccattggtttatctgatagtgctttacttccatatgatggttcagttaaca |
47623429 |
T |
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| Q |
211 |
ttaaaattccagcaatcagaccacatttcacaagggatatctgaatattttaaatttattttttcttcaagtaatctcctggacaatctccttacttgta |
310 |
Q |
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| T |
47623428 |
ttaaagttccagcaatcagaccacatttcacaagggatgtctgaatattttaaatttattttttcttcaagtaatctcctggacaatctccttacttgta |
47623329 |
T |
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| Q |
311 |
ctggcctcttgtacaaacatgctgagcctatttacttaaatat |
353 |
Q |
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| T |
47623328 |
ctggcctcttgtacaaacatgctgagcctatttacttaaatat |
47623286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 11 - 97
Target Start/End: Original strand, 52887348 - 52887434
Alignment:
| Q |
11 |
caaaggagttaggttcttctatcttgggatctcctctgtacaagtttcccttagacctaaagtacattaatgacatgcaatcagttg |
97 |
Q |
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||||||||||||||||||||||||| |||| |||||| ||||||||| ||||||||||||| |||||||| || ||||||||||||| |
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| T |
52887348 |
caaaggagttaggttcttctatcttaggatatcctctttacaagttttccttagacctaaaatacattaaggatatgcaatcagttg |
52887434 |
T |
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