View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12530_high_4 (Length: 347)
Name: NF12530_high_4
Description: NF12530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12530_high_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 22 - 342
Target Start/End: Complemental strand, 11068193 - 11067872
Alignment:
| Q |
22 |
acacatgatacatagatagatagatatagctcacttttattttttgagtaaatgatgaatatag-gttaacctttaactaagttcccatcaaggtctcta |
120 |
Q |
| |
|
|||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
11068193 |
acacatgatagatagatagatagatatagttcacttttattttttgagtaaatgatgaatatattgttaacctttaactaagttcccatcaaggtctcta |
11068094 |
T |
|
| Q |
121 |
acaatattaacaataaactgctggtatttctttggaggtggagtgttatcattaagcttctcgtattctattctcaactttaaatttccattctcaacgt |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11068093 |
acaatattaacaataaactgctggtatttctttggaggtggagtgttatcattaagcttctcgtattctattctcaactttaaatttccattctcaacgt |
11067994 |
T |
|
| Q |
221 |
ttactatggccttgtagtttttatacaactccaacacattccctcccactgcaacatatgttatagtcttgttcacttcatccacttcaatcctttcgtt |
320 |
Q |
| |
|
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11067993 |
tcactattgccttgtagtttttatacaactccaacacattccctcccactgcaacgtatgttatagtcttgttcacttcatccacttcaatcctttcgtt |
11067894 |
T |
|
| Q |
321 |
gaatgtctcctcctttgcttct |
342 |
Q |
| |
|
||| |||||||||||| ||||| |
|
|
| T |
11067893 |
gaaggtctcctcctttccttct |
11067872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University