View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12530_low_1 (Length: 453)
Name: NF12530_low_1
Description: NF12530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12530_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 569688 - 569461
Alignment:
| Q |
1 |
ataccctccaatttgcataatctctcgtacgctgcaaagtcatagaacatgaactgtttaaatatttgtgcatggttttgattatatataatgtctatgt |
100 |
Q |
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| T |
569688 |
ataccctccaatttgcataatctctcgtacgctgcaaagtcatagcacatgaactgtttaaatatttgtgcatggttttgattatatataatgtctatgt |
569589 |
T |
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| Q |
101 |
tttaattaggaaagtatatatataccatcaagagcttcttcatcggttgcgacacaaaactctgcacgtccactttctttgaggaaactcaactctggac |
200 |
Q |
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| T |
569588 |
tttaat-----aagcaagtatataccatcaagagcttcttcatcggttgcgacacaaaactctgcacgtccactttctttgaggaaactcaactctggac |
569494 |
T |
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| Q |
201 |
taactcctgggtactccatcctgcaaataatta |
233 |
Q |
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| T |
569493 |
caactcctgggtactccatcctgcaaataatta |
569461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 229 - 436
Target Start/End: Complemental strand, 569215 - 569027
Alignment:
| Q |
229 |
aattattttcttaatctctttttgctgatttttaactcaattaattcgtatcgtatgacaaatatcttactaatactcaaaattgaaataggataggata |
328 |
Q |
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| T |
569215 |
aattattttcttaatctctttttgctgatttttaactcaattaattcgtatcgtatgacaaa-------------------attgaaataggataggata |
569135 |
T |
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| Q |
329 |
atttattccgtctcttattctagccacaaaacaataatactaccggataaaagttctgaataaaatagtgaagtattattggtgtgacttaccctgctgc |
428 |
Q |
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| T |
569134 |
atttattccgtctcttattctagccacaaaacaataatactaccggataaaagttctcaataaaatagtgaagtattattggtgtgacttaccctgctgc |
569035 |
T |
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