View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12530_low_2 (Length: 418)
Name: NF12530_low_2
Description: NF12530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12530_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 18 - 410
Target Start/End: Complemental strand, 34954964 - 34954572
Alignment:
| Q |
18 |
gtatggaggctgaaaaaacgacagaaagatgagcatttcaaactcttgaaaatttattgatgtccaagtattgcacattaatctaacttctgtgtgtgca |
117 |
Q |
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| T |
34954964 |
gtatggaggctgaaaaaacgacagaaagatgagcatttcaaactcttgaaaatttattgatgtccaagtattgcacattaatctaacttctgtgtgtgca |
34954865 |
T |
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| Q |
118 |
gttggagcattaccttcagattgttaaaacagaagtgattactagacaaggttatcaattagttgaggagtacgaatacacagctcacagcagtttagca |
217 |
Q |
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| T |
34954864 |
gttggagcattaccttcagattgttaaaacagaagtgattactagacaaggctatcaattagttgaggagtacgaatacacagctcacagcagtttagca |
34954765 |
T |
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| Q |
218 |
cacagtttacacgttcctgttgcgaggttccatcttcaactctcccccatgcaggtctgcgtatggagattatcagttttaataggtttctgctctttta |
317 |
Q |
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| T |
34954764 |
cacagtttacacgttcctgttgcgaggttccatcttcaactctcccccatgcaggtctgcgtatggagattatcggttttaataggtttctgttctttta |
34954665 |
T |
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| Q |
318 |
aacttcttgttgatttactgagttttttgtgagcaggtcttgataacagaagatcacaagtctttctcacattttattacaaacgtctgtgct |
410 |
Q |
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| T |
34954664 |
aacttcttgttgatttactgagttttttgtgagcaggtcttgataacagaagatcataagtctttctcacattttattacaaacgtctgtgct |
34954572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 108 - 274
Target Start/End: Original strand, 31392770 - 31392936
Alignment:
| Q |
108 |
tgtgtgtgcagttggagcattaccttcagattgttaaaacagaagtgattactagacaaggttatcaattagttgaggagtacgaatacacagctcacag |
207 |
Q |
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| T |
31392770 |
tgtgtctgcagatagagcattatattcaggtagttaaaacagaggtaataaccagaaaaggttataaattaatcgaagagtacgagtacacagcacacag |
31392869 |
T |
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| Q |
208 |
cagtttagcacacagtttacacgttcctgttgcgaggttccatcttcaactctcccccatgcaggtc |
274 |
Q |
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| T |
31392870 |
cagtgtggcacacagcgtgaacattcctgttgcaaggttccatcttgagctctcccctatgcaggtc |
31392936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 342 - 410
Target Start/End: Original strand, 31393013 - 31393081
Alignment:
| Q |
342 |
ttttgtgagcaggtcttgataacagaagatcacaagtctttctcacattttattacaaacgtctgtgct |
410 |
Q |
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| T |
31393013 |
ttttgttatcaggtcttaataacagaaaaccagaagtctttttcacattttattacaaatgtctgtgct |
31393081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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