View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12531_high_1 (Length: 425)
Name: NF12531_high_1
Description: NF12531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12531_high_1 |
 | |
|
| [»] chr2 (4 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 400; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 1 - 424
Target Start/End: Complemental strand, 40591537 - 40591114
Alignment:
| Q |
1 |
atgtttgtagattttatatctctatgaatgattggagtagaagctgcagaatgtaagtatgccaagactccagcagtttcttttgctattcttaaccttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
40591537 |
atgtttgtagattttatatctctatgaatgattggagtagaagcagcagaatgtaagtatgccaggactccagcagtttcttttgctattcttaaccttg |
40591438 |
T |
|
| Q |
101 |
ttttccatgtcagctttatagcttggttttgatcatgaagatgatcgtaaacagttccattgggaatgaattcataaacaagcaatggaacttctgtctc |
200 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40591437 |
ttttccatgtcagctttatagattggttttgatcatgaagatgatcgtaaacagttccattgggaatgaattcataaacaagcaatggaacttctgtctc |
40591338 |
T |
|
| Q |
201 |
taaacaacaacccaaaattcttaccacatttctatggttgattttagaaagaacgaccacttcattgatgaatggctcaatctggttttggtcattgatt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40591337 |
taaacaacaacccaaaattcttaccacatttctatggttgatttgagaaagaacgaccacttcattgatgaatggctcaatctggttttggtcattgatt |
40591238 |
T |
|
| Q |
301 |
ttggacttttttattgctacaaaacttttatcttgtaaaactcctttgtaaactgttccctgagaacctttgcctagaatctttccttcatcaaaattgt |
400 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40591237 |
ttggacttttttattgctacaatacttttatcttgtaaaactcctttgtaaactgttccctgagaacctttgcctagaatctttccttcatcaaaattgt |
40591138 |
T |
|
| Q |
401 |
tagttgcttcatttagttcctcaa |
424 |
Q |
| |
|
|||||||||||||||| ||||||| |
|
|
| T |
40591137 |
tagttgcttcatttagctcctcaa |
40591114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 424
Target Start/End: Complemental strand, 40602187 - 40601764
Alignment:
| Q |
1 |
atgtttgtagattttatatctctatgaatgattggagtagaagctgcagaatgtaagtatgccaagactccagcagtttcttttgctattcttaaccttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |
|
|
| T |
40602187 |
atgtttgtagattttatatctctatgaatgattggagtagaagcagcagaatgtaagtatgccaagactccagcagtttctgttgctattcttaatcttg |
40602088 |
T |
|
| Q |
101 |
ttttccatgtcagctttatagcttggttttgatcatgaagatgatcgtaaacagttccattgggaatgaattcataaacaagcaatggaacttctgtctc |
200 |
Q |
| |
|
| |||||||| |||||||||| ||||||||||||||||||||||| |||||||| ||||||| ||| || |||||||||||||||||||||||||| || |
|
|
| T |
40602087 |
tgttccatgtaagctttatagactggttttgatcatgaagatgatcataaacagtaccattggaaataaactcataaacaagcaatggaacttctgtttc |
40601988 |
T |
|
| Q |
201 |
taaacaacaacccaaaattcttaccacatttctatggttgattttagaaagaacgaccacttcattgatgaatggctcaatctggttttggtcattgatt |
300 |
Q |
| |
|
|||||| |||||||||| ||||||||||||||||||||||| |||||||| || ||||||||||||||| ||||||||||||||||||||| ||||| |
|
|
| T |
40601987 |
taaacagcaacccaaaagctgtaccacatttctatggttgatttgagaaagaatgatcacttcattgatgaacggctcaatctggttttggtcactgatt |
40601888 |
T |
|
| Q |
301 |
ttggacttttttattgctacaaaacttttatcttgtaaaactcctttgtaaactgttccctgagaacctttgcctagaatctttccttcatcaaaattgt |
400 |
Q |
| |
|
|||||||||||||||| |||| || |||||||||||||||||||||||||||||||||||| ||||| |||||| ||| | | ||||| || |||| |
|
|
| T |
40601887 |
gtggacttttttattgcgacaattctgttatcttgtaaaactcctttgtaaactgttccctgaccaccttggcctaggatcctgctttcattgaagttgt |
40601788 |
T |
|
| Q |
401 |
tagttgcttcatttagttcctcaa |
424 |
Q |
| |
|
| ||||||| |||||| ||||||| |
|
|
| T |
40601787 |
tggttgctttatttagctcctcaa |
40601764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 4 - 425
Target Start/End: Complemental strand, 40568628 - 40568207
Alignment:
| Q |
4 |
tttgtagattttatatctctatgaatgattggagtagaagctgcagaatgtaagtatgccaagactccagcagtttcttttgctattcttaaccttgttt |
103 |
Q |
| |
|
||||||||||| | ||||||||| |||||||| || ||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||| || |||| |
|
|
| T |
40568628 |
tttgtagatttcacatctctatgtatgattggtgttgaagccgcagagtgtaagtatgccaggactccagcagtttcttttgctattcttaatctggttt |
40568529 |
T |
|
| Q |
104 |
tccatgtcagctttatagcttggttttgatcatgaagatgatcgtaaacagttccattgggaatgaattcataaacaagcaatggaacttctgtctctaa |
203 |
Q |
| |
|
||||||| || ||||||| ||||||||||||||||||||| ||||||||||| || |||| ||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
40568528 |
tccatgtaagttttatagtttggttttgatcatgaagatgctcgtaaacagtgccgttggaaatgaattcataaacaagcaagggaacttctgtctctaa |
40568429 |
T |
|
| Q |
204 |
acaacaacccaaaattcttaccacatttctatggttgattttagaaagaacgaccacttcattgatgaatggctcaatctggttttggtcattgattttg |
303 |
Q |
| |
|
|||||||||||| | |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||| ||| |||| |
|
|
| T |
40568428 |
acaacaacccaagagctttaccacatttctatggttgatttgggaaagaacgaccacttcattgatgaacggctcaatctggtttgggtcactgactttg |
40568329 |
T |
|
| Q |
304 |
gacttttttattgctacaaaacttttatcttgtaaaactcctttgtaaactgttccctgagaacctttgcctagaatctttccttcatcaaaattgttag |
403 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||| ||||| |||||| ||||| ||||||||||| || || | |
|
|
| T |
40568328 |
gacttttttattgctacaattcttttattttgtaaaactcctttgtaaacagttccctgaccaccttggcctaggatcttaccttcatcaaagttattgg |
40568229 |
T |
|
| Q |
404 |
ttgcttcatttagttcctcaac |
425 |
Q |
| |
|
||||||||||||| |||||||| |
|
|
| T |
40568228 |
ttgcttcatttagctcctcaac |
40568207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 4 - 424
Target Start/End: Complemental strand, 40598016 - 40597596
Alignment:
| Q |
4 |
tttgtagattttatatctctatgaatgattggagtagaagctgcagaatgtaagtatgccaagactccagcagtttcttttgctattcttaaccttgttt |
103 |
Q |
| |
|
||||||||||| | ||||||||| |||||||| || ||||| ||||||||||||||||||| ||||||||||||||||||||||||||| || ||||||| |
|
|
| T |
40598016 |
tttgtagatttgacatctctatgtatgattggtgtggaagcagcagaatgtaagtatgccaggactccagcagtttcttttgctattctcaatcttgttt |
40597917 |
T |
|
| Q |
104 |
tccatgtcagctttatagcttggttttgatcatgaagatgatcgtaaacagttccattgggaatgaattcataaacaagcaatggaacttctgtctctaa |
203 |
Q |
| |
|
||||||| |||||| ||| || |||||| ||||||| ||| || ||||| || ||||||||||| ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
40597916 |
tccatgtaagctttctagattcgttttggtcatgaatatgctcataaactgtaccattgggaataaattcataaacaagcaatggaacttctgtttctaa |
40597817 |
T |
|
| Q |
204 |
acaacaacccaaaattcttaccacatttctatggttgattttagaaagaacgaccacttcattgatgaatggctcaatctggttttggtcattgattttg |
303 |
Q |
| |
|
||||||||| | || | |||||||||| ||||||||||||| ||||| ||| |||||||||||||||| | ||||||||||||| ||||| ||||||| |
|
|
| T |
40597816 |
acaacaacctacaagttttaccacattcctatggttgatttgggaaagcacggccacttcattgatgaacgactcaatctggtttgggtcactgattttt |
40597717 |
T |
|
| Q |
304 |
gacttttttattgctacaaaacttttatcttgtaaaactcctttgtaaactgttccctgagaacctttgcctagaatctttccttcatcaaaattgttag |
403 |
Q |
| |
|
||||| ||||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||| |||||| || || ||||||| || ||| | | |
|
|
| T |
40597716 |
gacttctttattgctacaatacttttatcttctaaaactcctttgtaaactgttccctgaccaccttggcctaggattttgccttcattgaagttgctgg |
40597617 |
T |
|
| Q |
404 |
ttgcttcatttagttcctcaa |
424 |
Q |
| |
|
|||| ||||||| ||||||| |
|
|
| T |
40597616 |
ttgcctcatttaactcctcaa |
40597596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 4 - 425
Target Start/End: Complemental strand, 40579686 - 40579265
Alignment:
| Q |
4 |
tttgtagattttatatctctatgaatgattggagtagaagctgcagaatgtaagtatgccaagactccagcagtttcttttgctattcttaaccttgttt |
103 |
Q |
| |
|
|||| |||||| | ||||||||| |||||||| |||||||| ||||| ||||| ||||||| || ||||||| ||| |||||||||||||| ||||||| |
|
|
| T |
40579686 |
tttgaagatttcacatctctatgtatgattggtgtagaagcagcagagtgtaaatatgccagcacaccagcagcttcctttgctattcttaatcttgttt |
40579587 |
T |
|
| Q |
104 |
tccatgtcagctttatagcttggttttgatcatgaagatgatcgtaaacagttccattgggaatgaattcataaacaagcaatggaacttctgtctctaa |
203 |
Q |
| |
|
||||||| ||||| |||| |||| ||| |||||||||||| || |||||||| ||||||||||| ||||| |||||||| || ||||||||||||||||| |
|
|
| T |
40579586 |
tccatgtaagcttcatagattgggtttcatcatgaagatgctcataaacagtaccattgggaataaattcgtaaacaagtaacggaacttctgtctctaa |
40579487 |
T |
|
| Q |
204 |
acaacaacccaaaattcttaccacatttctatggttgattttagaaagaacgaccacttcattgatgaatggctcaatctggttttggtcattgattttg |
303 |
Q |
| |
|
||||||||||||||| |||||||||||||||| ||||||| ||||||| |||||||||||||||||| | |||||||||||| ||||| | |||||| |
|
|
| T |
40579486 |
acaacaacccaaaatctttaccacatttctatgattgatttgggaaagaatgaccacttcattgatgaacgactcaatctggttcgggtcacttattttg |
40579387 |
T |
|
| Q |
304 |
gacttttttattgctacaaaacttttatcttgtaaaactcctttgtaaactgttccctgagaacctttgcctagaatctttccttcatcaaaattgttag |
403 |
Q |
| |
|
||||||||||||||||||| || |||||||||||||||||||||||||| |||||||| ||||| |||||| ||| | |||||||| || ||||| | |
|
|
| T |
40579386 |
gacttttttattgctacaattctgttatcttgtaaaactcctttgtaaacaattccctgaccaccttggcctaggatcgtgccttcatcgaagttgttgg |
40579287 |
T |
|
| Q |
404 |
ttgcttcatttagttcctcaac |
425 |
Q |
| |
|
|||| || ||||| |||||||| |
|
|
| T |
40579286 |
ttgcatcttttagctcctcaac |
40579265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 4 - 425
Target Start/End: Complemental strand, 40573229 - 40572808
Alignment:
| Q |
4 |
tttgtagattttatatctctatgaatgattggagtagaagctgcagaatgtaagtatgccaagactccagcagtttcttttgctattcttaaccttgttt |
103 |
Q |
| |
|
|||| |||||| | ||||||||| |||||||| || ||||| ||||| ||||||||||||| ||| || || ||||||||| |||||||||||||||| |
|
|
| T |
40573229 |
tttgaagatttcacatctctatgtatgattggtgtcgaagcagcagagtgtaagtatgccaggacaccggctatttcttttgaaattcttaaccttgttt |
40573130 |
T |
|
| Q |
104 |
tccatgtcagctttatagcttggttttgatcatgaagatgatcgtaaacagttccattgggaatgaattcataaacaagcaatggaacttctgtctctaa |
203 |
Q |
| |
|
||||||| |||||||||| |||| ||| ||||||||||| || |||||||| ||||||||||| |||||||| |||| || ||||||||||||||||| |
|
|
| T |
40573129 |
tccatgtaagctttatagattgggtttcgtcatgaagatgctcataaacagtaccattgggaataaattcatacacaactaagggaacttctgtctctaa |
40573030 |
T |
|
| Q |
204 |
acaacaacccaaaattcttaccacatttctatggttgattttagaaagaacgaccacttcattgatgaatggctcaatctggttttggtcattgattttg |
303 |
Q |
| |
|
|||||| ||||| || |||||||||||||||||||||||| ||||| |||||||||||||||||||| | ||||| |||||| ||||| | |||||| |
|
|
| T |
40573029 |
acaacagcccaagatctttaccacatttctatggttgatttgggaaagtacgaccacttcattgatgaacgactcaacctggttcgggtcacttattttg |
40572930 |
T |
|
| Q |
304 |
gacttttttattgctacaaaacttttatcttgtaaaactcctttgtaaactgttccctgagaacctttgcctagaatctttccttcatcaaaattgttag |
403 |
Q |
| |
|
||||||||||||||||||| || |||| ||||||||||||||||||||| |||| ||| ||||| |||||| ||||| |||| ||| || ||||| | |
|
|
| T |
40572929 |
gacttttttattgctacaattctgttattttgtaaaactcctttgtaaacaattccttgaccaccttggcctaggatcttgccttgatcgaagttgttgg |
40572830 |
T |
|
| Q |
404 |
ttgcttcatttagttcctcaac |
425 |
Q |
| |
|
||||||| ||||| |||||||| |
|
|
| T |
40572829 |
ttgcttcttttagctcctcaac |
40572808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 221; Significance: 1e-121; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 425
Target Start/End: Original strand, 2015105 - 2015529
Alignment:
| Q |
1 |
atgtttgtagattttatatctctatgaatgattggagtagaagctgcagaatgtaagtatgccaagactccagcagtttcttttgctattcttaaccttg |
100 |
Q |
| |
|
||||||| |||||| | ||||||||| |||||||| ||||| || |||||||| |||||||| | ||||||||||||||||||||||||||| || |||| |
|
|
| T |
2015105 |
atgtttgaagatttcacatctctatgtatgattggtgtagatgcagcagaatgcaagtatgctaggactccagcagtttcttttgctattctcaatcttg |
2015204 |
T |
|
| Q |
101 |
ttttccatgtcagctttatagcttggttttgatcatgaagatgatcgtaaacagttccattgggaatgaattcataaacaagcaatggaacttctgtctc |
200 |
Q |
| |
|
|||||||||| ||||||| || | | ||||||||||||||||| || |||||||| ||||||||||||||||| |||||||| || |||||||||||||| |
|
|
| T |
2015205 |
ttttccatgtaagctttaaagttggattttgatcatgaagatgctcataaacagtaccattgggaatgaattcgtaaacaagtaaaggaacttctgtctc |
2015304 |
T |
|
| Q |
201 |
taaacaacaacccaaaattcttaccacatttctatggttgattttagaaagaacgaccacttcattgatgaatggctcaatctggttttggtcattgatt |
300 |
Q |
| |
|
||||||||||||||| | |||||||||||||||||||||||| ||||| || | ||||||||||||||| |||||||||||||| ||||| ||||| |
|
|
| T |
2015305 |
taaacaacaacccaagagctttaccacatttctatggttgatttgtgaaagcacaatcacttcattgatgaacggctcaatctggttagggtcactgatt |
2015404 |
T |
|
| Q |
301 |
ttggacttttttattgctacaaaacttttatcttgtaaaactcctttgtaaactgttccctgagaacctttgcctagaatctttccttcatcaaaattgt |
400 |
Q |
| |
|
|||||||| || || ||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| ||||| || || |||| |
|
|
| T |
2015405 |
ttggacttcttaatagctacaattcttttatcttgtaaaactcctttgtaaactgttccctgacctccttggcctagaatcttgccttcgtcgaagttgt |
2015504 |
T |
|
| Q |
401 |
tagttgcttcatttagttcctcaac |
425 |
Q |
| |
|
| |||||||||||||| |||||||| |
|
|
| T |
2015505 |
tggttgcttcatttagctcctcaac |
2015529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 157 - 253
Target Start/End: Complemental strand, 11845187 - 11845091
Alignment:
| Q |
157 |
ccattgggaatgaattcataaacaagcaatggaacttctgtctctaaacaacaacccaaaattcttaccacatttctatggttgattttagaaagaa |
253 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| ||||||||| |||||||| || || || | ||||||||||||| |||||||| ||||||| |
|
|
| T |
11845187 |
ccattaggaatgaattcataaacaagcaatggaatttctgtctccaaacaacatcctaatatcttgaccacatttctattgttgatttgtgaaagaa |
11845091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 157 - 253
Target Start/End: Complemental strand, 11849916 - 11849820
Alignment:
| Q |
157 |
ccattgggaatgaattcataaacaagcaatggaacttctgtctctaaacaacaacccaaaattcttaccacatttctatggttgattttagaaagaa |
253 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| ||||||||| |||||||| || || || | ||||||||||||| |||||||| ||||||| |
|
|
| T |
11849916 |
ccattaggaatgaattcataaacaagcaatggaatttctgtctccaaacaacatcctaatatcttgaccacatttctattgttgatttgtgaaagaa |
11849820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 157 - 209
Target Start/End: Complemental strand, 11853107 - 11853055
Alignment:
| Q |
157 |
ccattgggaatgaattcataaacaagcaatggaacttctgtctctaaacaaca |
209 |
Q |
| |
|
|||||| ||||||||||||||| ||||||||||| | |||||| |||||||| |
|
|
| T |
11853107 |
ccattgagaatgaattcataaataagcaatggaatatttgtctccaaacaaca |
11853055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 67; Significance: 1e-29; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 97 - 267
Target Start/End: Original strand, 14153418 - 14153584
Alignment:
| Q |
97 |
cttgttttccatgtcagctttatagcttggttttgatcatgaagatgatcgtaaacagttccattgggaatgaattcataaacaagcaatggaacttctg |
196 |
Q |
| |
|
|||||||||||||| ||||||| || ||||||||||||||||||||||| |||||| | ||||| | ||| ||||| |||||||| |||||||||| |
|
|
| T |
14153418 |
cttgttttccatgtaagctttaaagattggttttgatcatgaagatgataataaacaataccatt-gcaataaattcgtaaacaag----ggaacttctg |
14153512 |
T |
|
| Q |
197 |
tctc-taaacaacaacccaaaattcttaccacatttctatggttgattttagaaagaacgaccacttcattg |
267 |
Q |
| |
|
|||| |||| |||||||||||| ||||||||||| |||||||||||| |||||||||||||||| |||| |
|
|
| T |
14153513 |
tctcttaaaaaacaacccaaaagatttaccacatttatatggttgatttgggaaagaacgaccactttattg |
14153584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 69 - 173
Target Start/End: Original strand, 14022898 - 14023002
Alignment:
| Q |
69 |
tccagcagtttcttttgctattcttaaccttgttttccatgtcagctttatagcttggttttgatcatgaagatgatcgtaaacagttccattgggaatg |
168 |
Q |
| |
|
||||||| |||||||||||||||| || |||||||||||||| ||| ||| || ||||||||||||||||||||| || |||||||| ||||||| ||| |
|
|
| T |
14022898 |
tccagcaatttcttttgctattctcaatcttgttttccatgtaagcgttaaagattggttttgatcatgaagatgctcataaacagtaccattggaaata |
14022997 |
T |
|
| Q |
169 |
aattc |
173 |
Q |
| |
|
||||| |
|
|
| T |
14022998 |
aattc |
14023002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 86 - 266
Target Start/End: Original strand, 13765643 - 13765822
Alignment:
| Q |
86 |
ctattcttaaccttgttttccatgtcagctttatagcttggttttgatcatgaagatgatcgtaaacagttccattgggaatgaattcataaacaagcaa |
185 |
Q |
| |
|
||||||| || |||||||||||||| ||| ||| || |||| ||||||||| || ||| | |||||| | | || ||||| ||||| |||| ||| || |
|
|
| T |
13765643 |
ctattctcaatcttgttttccatgtaagcattaaagattggctttgatcattaatatgcgcataaacaatatcgttaggaataaattcgtaaagaagtaa |
13765742 |
T |
|
| Q |
186 |
tggaacttctgtctctaaacaacaacccaaaattcttaccacatttctatggttgattttagaaagaacgaccacttcatt |
266 |
Q |
| |
|
||||||||||||||||||||||||| ||||| ||||||||||| || |||||||||||||| ||| ||| || ||||| |
|
|
| T |
13765743 |
gggaacttctgtctctaaacaacaactcaaaaaatttaccacattt-tacggttgattttagaatgaatgactacatcatt |
13765822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 127 - 268
Target Start/End: Complemental strand, 14023367 - 14023226
Alignment:
| Q |
127 |
ttttgatcatgaagatgatcgtaaacagttccattgggaatgaattcataaacaagcaatggaacttctgtctctaaacaa-caacccaaaattcttacc |
225 |
Q |
| |
|
||||||||||||| ||||| |||| ||| |||||| ||| |||||||||||||| || |||||||||||| |||| || |||||||||| | ||| |
|
|
| T |
14023367 |
ttttgatcatgaaaatgatactaaagagtaccattgc-aataaattcataaacaagtaagagaacttctgtctttaaaaaaacaacccaaaagaatcacc |
14023269 |
T |
|
| Q |
226 |
acatttctatggttgattttagaaagaacgaccacttcattga |
268 |
Q |
| |
|
|||||| |||| |||||||| |||||||||||||||| ||||| |
|
|
| T |
14023268 |
acatttatatgattgattttggaaagaacgaccactttattga |
14023226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 75 - 272
Target Start/End: Complemental strand, 14155228 - 14155044
Alignment:
| Q |
75 |
agtttcttttgctattcttaaccttgttttccatgtcagctttatagcttggttttgatcatgaagatgatcgtaaacagttccattgggaatgaattca |
174 |
Q |
| |
|
|||||||||||| ||||| | ||||| ||||| || ||||||| || ||||||||||||||||||||| || ||||||| |||||| |||| ||||| |
|
|
| T |
14155228 |
agtttcttttgccattctcattcttgtattccaagtaagctttaaagattggttttgatcatgaagatgctcaaaaacagtaccattgagaataaattcg |
14155129 |
T |
|
| Q |
175 |
taaacaagcaatggaacttctgtctctaaacaacaacccaaaattcttaccacatttctatggttgattttagaaagaacgaccacttcattgatgaa |
272 |
Q |
| |
|
|||||| | ||||||||| |||||| |||||| |||||||||||||||| ||||||| |||||||| |||| |||||||||||| |
|
|
| T |
14155128 |
taaaca------------tgtgtctctaagcaacaa-ccaaaagctttaccacatttctatgattgatttgggaaagaacaaccatttcattgatgaa |
14155044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 169 - 273
Target Start/End: Complemental strand, 1868504 - 1868400
Alignment:
| Q |
169 |
aattcataaacaagcaatggaacttctgtctctaaacaacaacccaaaattcttaccacatttctatggttgattttagaaagaacgaccacttcattga |
268 |
Q |
| |
|
||||||||||| | ||| ||||||||||||||||||||||| ||||| | | | || ||||| ||||| || |||| ||| ||||| ||||| ||||| | |
|
|
| T |
1868504 |
aattcataaaccaacaaaggaacttctgtctctaaacaacaccccaagagtttgacaacattcctatgatttatttgagagagaacaaccacctcattaa |
1868405 |
T |
|
| Q |
269 |
tgaat |
273 |
Q |
| |
|
||||| |
|
|
| T |
1868404 |
tgaat |
1868400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 169 - 215
Target Start/End: Complemental strand, 1842895 - 1842849
Alignment:
| Q |
169 |
aattcataaacaagcaatggaacttctgtctctaaacaacaacccaa |
215 |
Q |
| |
|
||||||||||| | ||| ||||||||||||||||||||||| ||||| |
|
|
| T |
1842895 |
aattcataaaccaacaaaggaacttctgtctctaaacaacaccccaa |
1842849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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