View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12531_high_2 (Length: 394)
Name: NF12531_high_2
Description: NF12531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12531_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 1 - 385
Target Start/End: Complemental strand, 32882771 - 32882387
Alignment:
| Q |
1 |
aaaggtttacgacgatgttgatagggataagaattacgattgcgattgatccttcgaatagattcatcgccgataactttggagcctttttcagtttcat |
100 |
Q |
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| T |
32882771 |
aaaggtttacgacgatgttgatagggataagaattacgattgcgattgatccttcgaatagattcatcgccgataactttggagcctttttcagtttcat |
32882672 |
T |
|
| Q |
101 |
gattaacgataattttatcaggtccatgaatcttgtagtaagagagaactccatcttgaagaacaaaccatcgaggtctccatcctttaccgtaattcac |
200 |
Q |
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| T |
32882671 |
gattaacgataattttatcaggtccatgaatcttgtagtaagagagaactccatcttgaagaacaaaccatcgaggtctccatcctttaccgtaattcac |
32882572 |
T |
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| Q |
201 |
ccatttatacagtataccggagatgccatttccgacgaggtcgttgatcttcaaatcaacaaccaccgccggctgttcccgctgacaaccgttgctatgg |
300 |
Q |
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| T |
32882571 |
ccatttatacagtataccggagattccatttccgacgaggtcgttgatcttcaaatcaacaaccaccgccggctgttcccgctgacaaccgttgctatgg |
32882472 |
T |
|
| Q |
301 |
ctgtgactatgaatcggagccgccgaatcggatctaacagcgacggatggtggtggaggaggaggcatggtgaagtcagtgaacg |
385 |
Q |
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| T |
32882471 |
ctgtgactatgaatcggagccggcgaatcggatctaacagcgacagatggtggtggaggaggaggcatggtgaagtcagtgaacg |
32882387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 61 - 249
Target Start/End: Complemental strand, 24479162 - 24478974
Alignment:
| Q |
61 |
gattcatcgccgataactttggagcctttttcagtttcatgattaacgataattttatcaggtccatgaatcttgtagtaagagagaactccatcttgaa |
160 |
Q |
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||||||||||| ||||| ||| | ||||| ||||||||| |||| | | ||| ||||||||||||||||||||||| ||||| ||||| |||||||| | |
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| T |
24479162 |
gattcatcgccaataaccttgaatcctttctcagtttcaggattgattacaatcttatcaggtccatgaatcttgtaataagaaagaacaccatcttgca |
24479063 |
T |
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| Q |
161 |
gaacaaaccatcgaggtctccatcctttaccgtaattcacccatttatacagtataccggagatgccatttccgacgaggtcgttgatc |
249 |
Q |
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|||||||||||| | ||||||||||||||||||||||||||||| | ||||| || || || ||||| || ||||||||||||||| |
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| T |
24479062 |
acacaaaccatcgatgcctccatcctttaccgtaattcacccatttctgaagtattccagatattccattcccaacgaggtcgttgatc |
24478974 |
T |
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