View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12531_high_3 (Length: 383)
Name: NF12531_high_3
Description: NF12531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12531_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 11 - 374
Target Start/End: Complemental strand, 48245035 - 48244672
Alignment:
| Q |
11 |
cagagagagagactggatctgaagatttctgttcaacaaatgaagtactagctgcgttgttgctatcactatatgattcaggatggctatgaccagaact |
110 |
Q |
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| T |
48245035 |
cagagagagagactggatctgaagatttctgttcaacaaatgaagtactagctgcgttgttgctatcactatatgattcaggatggctatgaccagaact |
48244936 |
T |
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| Q |
111 |
tacctgataaggagggactagctccttttgttcagacaagcagttcctctgactacttgtagcaacatttccaaaagaaccttcaacagtagcattctca |
210 |
Q |
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| T |
48244935 |
tacctgataaggagggactagctccttttgttcagacaagcagttcctctgactacttgtagcaacatttccaaaagaaccttcaacagtagcattctca |
48244836 |
T |
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| Q |
211 |
cggaacccagttcccgtatcggtcgaggttgaactttcagcttgagcacaaaacctaaatctagcttcttctgcacctgataatgtcgactcatcagcga |
310 |
Q |
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| T |
48244835 |
cggaacccagttcccgtatcggtcgaggttgaactttcagcttgagcacaaaacctaaatctagcttcttctgcacctgataatgtcgactcatcagcga |
48244736 |
T |
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| Q |
311 |
gtttctgaatttcatcatcaaaatctctagctggatcaacctgaagttcttcatattgatgtcc |
374 |
Q |
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| T |
48244735 |
gtttctgaatttcatcatcaaaatctctagctggatcaacctgaagttcttcatattgatgtcc |
48244672 |
T |
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