View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12531_high_4 (Length: 309)
Name: NF12531_high_4
Description: NF12531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12531_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 176; Significance: 8e-95; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 14 - 291
Target Start/End: Complemental strand, 6163362 - 6163084
Alignment:
| Q |
14 |
agtgagatgaaaataatatttattaagaaagaattgttatgtctagtagtaccttaaggctt-atatagccaattagactaacgattgtcttaacgagtt |
112 |
Q |
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| T |
6163362 |
agtgaaatgaaaataatatttattaagaaagaattgttatgtctagtagtaccttaaggctttatatagccaattagactaacggttgttttaacgagtt |
6163263 |
T |
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| Q |
113 |
tcgacgcattgnnnnnnnnccagttt-aggagttgtgttattaccagctcgttgtgggtgattttggctgattttttgttatcttgaagatttttagctt |
211 |
Q |
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| T |
6163262 |
tcgacgcattgttttttt--cagttttaggagttgtgttattaccagctcgttgtgggtgtttttggctggttttttgttatcttgaagatttttagctt |
6163165 |
T |
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| Q |
212 |
tgggtgtttggagttgttcagagg-nnnnnnngctgttttatggtgtgggctgatttgggtattgatttagatgagattca |
291 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
6163164 |
tgggtgtttggagttgttcagaggttttttttcctgttttatggtgtgggctgatttgggtattgatttagatgggattca |
6163084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 111; Significance: 5e-56; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 136 - 291
Target Start/End: Original strand, 28159057 - 28159211
Alignment:
| Q |
136 |
tttaggagttgtgttattaccagctcgttgtgggtgattttggctgattttttgttatcttgaagatttttagctttgggtgtttggagttgttcagagg |
235 |
Q |
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| T |
28159057 |
tttaggagttgtgttattaccagctcgttgtgggtgtttttggctggttttttgttatcttgaagatttttagctttgggtgtttggagttgttcagagg |
28159156 |
T |
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| Q |
236 |
nnnnnnngctgttttatggtgtgggctgatttgggtattgatttagatgagattca |
291 |
Q |
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| T |
28159157 |
tttttttgttg-tttatggtgtgggctgatttgggtattgatttagatgggattca |
28159211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 14 - 122
Target Start/End: Original strand, 28158922 - 28159030
Alignment:
| Q |
14 |
agtgagatgaaaataatatttattaagaaagaattgttatgtctagtagtaccttaaggcttatatagccaattagactaacgattgtcttaacgagttt |
113 |
Q |
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| T |
28158922 |
agtgaaatgaaaataatatttattaagaaagaattgttatgtctagtagtaccttaaggcttatatagccaattagactaacggttgtcttaacgagttt |
28159021 |
T |
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| Q |
114 |
cgacgcatt |
122 |
Q |
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|||||||| |
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| T |
28159022 |
tgacgcatt |
28159030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 88
Target Start/End: Original strand, 26925817 - 26925883
Alignment:
| Q |
22 |
gaaaataatatttattaagaaagaattgttatgtctagtagtaccttaaggcttatatagccaatta |
88 |
Q |
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|||||||||||| |||| || |||||||||| | | |||||| |||||||||||||||||||||| |
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| T |
26925817 |
gaaaataatattgattatgagagaattgttacattaactagtacattaaggcttatatagccaatta |
26925883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 137 - 291
Target Start/End: Complemental strand, 14359332 - 14359178
Alignment:
| Q |
137 |
ttaggagttgtgttattaccagctcgttgtgggtgattttggctgattttttgttatcttgaagatttttagctttgggtgtttggagttgttcagaggn |
236 |
Q |
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|||||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||| ||| |||||||||||||||||||| ||||||||||||| |
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| T |
14359332 |
ttaggagttgtgttattaccagcttgttgtgggtgtttttggctgtttttttgttatctttaaggtttttagctttgggtgtttgaagttgttcagaggt |
14359233 |
T |
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| Q |
237 |
nnnnnngctgttttatggtgtgggctgatttgggtattgatttagatgagattca |
291 |
Q |
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| T |
14359232 |
ttttttgttgttttatggtgtgggctgatttgggtattgatttagatgggattca |
14359178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 14 - 89
Target Start/End: Complemental strand, 14359404 - 14359329
Alignment:
| Q |
14 |
agtgagatgaaaataatatttattaagaaagaattgttatgtctagtagtaccttaaggcttatatagccaattag |
89 |
Q |
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| T |
14359404 |
agtgaaatgaaaataatatttattaagaaagaattgttatgtctagtagtaccttaaggcttatatagccaattag |
14359329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 14 - 171
Target Start/End: Complemental strand, 4839940 - 4839783
Alignment:
| Q |
14 |
agtgagatgaaaataatatttattaagaaagaattgttatgtctagtagtaccttaaggcttatatagccaattagactaacgattgtcttaacgagttt |
113 |
Q |
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| T |
4839940 |
agtgaaatgaaaataatatttattaagaaagaattgttatgtctaatagtaccttaaggcttatatagccaattagactaacggttgtcttaacgagttt |
4839841 |
T |
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| Q |
114 |
cgacgcattgnnnnnnnnccagtttaggagttgtgttattaccagctcgttgtgggtg |
171 |
Q |
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|||||||||| | |||||| |||||||||||||| |||||||||||||| |
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| T |
4839840 |
cgacgcattgttttttttcagttttaggcgttgtgttattaccggctcgttgtgggtg |
4839783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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