View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12531_low_11 (Length: 244)
Name: NF12531_low_11
Description: NF12531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12531_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 16 - 230
Target Start/End: Original strand, 33454820 - 33455034
Alignment:
| Q |
16 |
cagagaaccaccttataccgcaattaaagttttaattgatggaaataagaacaagataaaacgtttccacattgcatcttcacaattttaacttgatcaa |
115 |
Q |
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| T |
33454820 |
cagagaaccaccttataccgcaattaaagttttaattgatggaaataagaacaagataaaacgtttccacattgcatcttcacaatttttacttgatcaa |
33454919 |
T |
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| Q |
116 |
ggaatatgtagacaaccaaagcaatcagtgtgcattgtataataccttccttaaaaacctatttatgcattttaactctcttgcttaaatgaaaatctta |
215 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33454920 |
ggaatatgtagacaaccaaagcaatatgtgtgcattgtataataccttccttaaaaacctatttatgcattttaactctcttgcttaaatgaaaatctta |
33455019 |
T |
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| Q |
216 |
gaggcctaatgatgt |
230 |
Q |
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||||||||||||||| |
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| T |
33455020 |
gaggcctaatgatgt |
33455034 |
T |
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