View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12531_low_2 (Length: 518)
Name: NF12531_low_2
Description: NF12531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12531_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 1193072 - 1192789
Alignment:
| Q |
1 |
aaaagtgacgtggttctatacttagtgttggtcaaattacagttacaatatttctttcatgttggtttttggacacaatatttcttcatgctaatgtagt |
100 |
Q |
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| T |
1193072 |
aaaagtgacgtggttctatacttagtgttggtcaaattacagttacaatatttctttcatgttggttcttggacacaatatttcttcatgctaatgtagt |
1192973 |
T |
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| Q |
101 |
cgaaatttatgagaattgagagtaaatgagtgttattccaatttaaatgtttaaatttgttctataaaacaagaatcatggaatttttagagagacactg |
200 |
Q |
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| T |
1192972 |
cgaaatttatgagaattgagagtaaatgagtgttattccaatttaaatgtttaaatttgttctataaaacaagaatcatggaatttttagacagacaccg |
1192873 |
T |
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| Q |
201 |
cactatatcct--tgaggttgattaataatctctcgagggaattgtcaaacctaaaggatatgatttacgaatccctcgtttgg |
282 |
Q |
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| T |
1192872 |
cactatatcgtactatatctgattaataatctctcgagggaattgttaaacctaaaaaatacgatttaagaatacttcgtttgg |
1192789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 350 - 500
Target Start/End: Complemental strand, 1192649 - 1192488
Alignment:
| Q |
350 |
acatttttcaaaggataataacatccaacaaattggtggtgatatgtgaatcttcctcgaaaagtaacattctaagcaaagtgcctct-------gtaca |
442 |
Q |
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| T |
1192649 |
acatttttcaaaggataataacatccaacaaattggtg---atatgtgaatcttcatcaaaaagtgacattctaagcaaagtgcctctactacaagtaca |
1192553 |
T |
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| Q |
443 |
agaattcaaagagcatctttgaagaccag-------tacagatggactcgaagataagcattctt |
500 |
Q |
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| T |
1192552 |
agaattcaaagagaatctttgaagatgagtagaaaatacagatggacttgaagataagcattctt |
1192488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 282 - 321
Target Start/End: Complemental strand, 1192612 - 1192573
Alignment:
| Q |
282 |
gatatgtgaatcttcgtcgaaaagtgacattctaagcaaa |
321 |
Q |
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| T |
1192612 |
gatatgtgaatcttcatcaaaaagtgacattctaagcaaa |
1192573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 21 - 61
Target Start/End: Original strand, 45642162 - 45642202
Alignment:
| Q |
21 |
cttagtgttggtcaaattacagttacaatatttctttcatg |
61 |
Q |
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| T |
45642162 |
cttagtgttggtcaaatttcagtcacaatatttccttcatg |
45642202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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