View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12531_low_3 (Length: 469)

Name: NF12531_low_3
Description: NF12531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12531_low_3
NF12531_low_3
[»] chr4 (7 HSPs)
chr4 (7-463)||(38909121-38909579)
chr4 (363-458)||(38922749-38922844)
chr4 (148-218)||(5912655-5912725)
chr4 (148-304)||(54521701-54521857)
chr4 (254-305)||(9844248-9844299)
chr4 (269-305)||(24188218-24188254)
chr4 (8-84)||(38923083-38923159)
[»] chr3 (6 HSPs)
chr3 (148-218)||(52750208-52750278)
chr3 (148-247)||(32471610-32471707)
chr3 (162-211)||(20505161-20505210)
chr3 (254-302)||(26576438-26576486)
chr3 (151-203)||(44914975-44915027)
chr3 (178-218)||(25181510-25181550)
[»] chr8 (5 HSPs)
chr8 (148-244)||(30284410-30284506)
chr8 (158-244)||(30051669-30051755)
chr8 (256-305)||(25016797-25016846)
chr8 (148-241)||(30035514-30035607)
chr8 (178-218)||(11443398-11443438)
[»] chr5 (2 HSPs)
chr5 (148-241)||(29161129-29161222)
chr5 (180-244)||(19626697-19626761)
[»] chr7 (5 HSPs)
chr7 (158-218)||(33895441-33895501)
chr7 (151-218)||(20553876-20553943)
chr7 (186-244)||(33008522-33008580)
chr7 (263-304)||(5232857-5232898)
chr7 (257-305)||(3467494-3467541)
[»] chr6 (4 HSPs)
chr6 (160-211)||(4433090-4433141)
chr6 (182-217)||(32062055-32062090)
chr6 (172-218)||(32847524-32847570)
chr6 (174-218)||(887958-888002)


Alignment Details
Target: chr4 (Bit Score: 382; Significance: 0; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 7 - 463
Target Start/End: Complemental strand, 38909579 - 38909121
Alignment:
Q  7 ggagaagcagagaagagagcaattgaagggaagatacaaaatcttgaggagtctcatcccaaattccaccaaagtaaataacaattaaccatctatggcn 106  Q
    |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  38909579 ggagaaacaaagaagagagcaattgaagggaagatacaaaatcttgaggagtctcatcccaaattccaccaaagtaaataacaattaaccatctatggct 38909480  T
Q  107 nnnnnnn-atccatatctaattatatatatgaattgagtatgaaccactttgcttttgtcattagatatataacttaaatcttgaattattttgaggttc 205  Q
            ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38909479 ttttttttatccatatctaattatatatatgaattgagtatcaaccactttgcttttgtcattagatatataacttaaatcttgaattattttgaggttc 38909380  T
Q  206 atatatcatatatgaaattgtaatttagttatgtcacttatagtttggttaaaaatgacattattattggcaatgtatcttacgattcataataagattc 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38909379 atatatcatatatgaaattgtaatttagttatgtcacttatagtttggttaaaaatgacattattattggcaatgtatcttacgattcataataagattc 38909280  T
Q  306 aaatcattattcg-nnnnnnntgtctttttgaatctctatttgataaccatgatttaaatgattaacgggcagttttgatctaatgcaggatgacagagc 404  Q
    |||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38909279 aaatcattattcgaaaaaaaatgtctttttgaatctctatttgataaccatgatttaaatgattaacgggcagttttgatctaatgcaggatgacagagc 38909180  T
Q  405 atcagtggttggagatgctattgagtatttaagagagctgattagaacagtgaacgagc 463  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  38909179 atcagtggttggagatgctattgagtatttaagagagctgattagaacagtgaatgagc 38909121  T

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Target: chr4; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 363 - 458
Target Start/End: Complemental strand, 38922844 - 38922749
Alignment:
Q  363 atgattaacgggcagttttgatctaatgcaggatgacagagcatcagtggttggagatgctattgagtatttaagagagctgattagaacagtgaa 458  Q
    |||||||||||||||||||| || |||||||  ||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  38922844 atgattaacgggcagttttggtcaaatgcagactgatagagcatcagtggttggagatgctattgagtatataagagagctgattagaacagtgaa 38922749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 148 - 218
Target Start/End: Original strand, 5912655 - 5912725
Alignment:
Q  148 aaccactttgcttttgtcattagatatataacttaaatcttgaattattttgaggttcatatatcatatat 218  Q
    |||| |||| ||||||||||| ||||||||| || ||||||||||||||||||||||||||||| ||||||    
T  5912655 aaccccttttcttttgtcatttgatatataatttgaatcttgaattattttgaggttcatatataatatat 5912725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 148 - 304
Target Start/End: Complemental strand, 54521857 - 54521701
Alignment:
Q  148 aaccactttgcttttgtcattagatatataacttaaatcttgaattattttgaggttcatatatcatatatgaaattgtaatttagttatgtcacttata 247  Q
    ||||||||| ||||||||||| ||||| | ||||||||||||| |||||||||  ||||||||| |   || |  || |||||  ||||| |||||| |     
T  54521857 aaccacttttcttttgtcatttgatatttgacttaaatcttgatttattttgatattcatatatgaaccatcagtttataattgtgttatttcacttgtt 54521758  T
Q  248 gtttggttaaaaatgacattattattggcaatgtatcttacgattcataataagatt 304  Q
     |||  ||  |||||||||| |||| | |||| ||||||| ||||||||||||||||    
T  54521757 ttttacttctaaatgacatttttatggacaatatatcttatgattcataataagatt 54521701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 254 - 305
Target Start/End: Complemental strand, 9844299 - 9844248
Alignment:
Q  254 ttaaaaatgacattattattggcaatgtatcttacgattcataataagattc 305  Q
    ||||||||| |||| ||||||| ||||| | |||||||||||||||||||||    
T  9844299 ttaaaaatgccatttttattggtaatgtgttttacgattcataataagattc 9844248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 269 - 305
Target Start/End: Original strand, 24188218 - 24188254
Alignment:
Q  269 ttattggcaatgtatcttacgattcataataagattc 305  Q
    ||||||| ||||||||||||| |||||||||||||||    
T  24188218 ttattggtaatgtatcttacggttcataataagattc 24188254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 8 - 84
Target Start/End: Complemental strand, 38923159 - 38923083
Alignment:
Q  8 gagaagcagagaagagagcaattgaagggaagatacaaaatcttgaggagtctcatcccaaattccaccaaagtaaa 84  Q
    ||||| || ||||| ||||||||||| ||||  |||||||||||||||  |||||| |||| | ||||||| |||||    
T  38923159 gagaaacaaagaagggagcaattgaatggaaagtacaaaatcttgagggatctcattccaagtcccaccaaggtaaa 38923083  T

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Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 148 - 218
Target Start/End: Original strand, 52750208 - 52750278
Alignment:
Q  148 aaccactttgcttttgtcattagatatataacttaaatcttgaattattttgaggttcatatatcatatat 218  Q
    ||||||||| ||||||||||| ||||| |||||| |||||||||||| |||||||||||||||| ||||||    
T  52750208 aaccacttttcttttgtcatttgatatttaacttgaatcttgaattagtttgaggttcatatatgatatat 52750278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 148 - 247
Target Start/End: Original strand, 32471610 - 32471707
Alignment:
Q  148 aaccactttgcttttgtcattagatatataacttaaatcttgaattattttgaggttcatatatcatatatgaaattgtaatttagttatgtcacttata 247  Q
    |||||||||  |||||||||||  ||| | |||| ||||||||||||||||||| |||||||||  ||||| || || |||||| |||||||||||||||    
T  32471610 aaccacttttattttgtcatta--tatttgacttgaatcttgaattattttgagattcatatatgctatatcaacttataattttgttatgtcacttata 32471707  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 162 - 211
Target Start/End: Original strand, 20505161 - 20505210
Alignment:
Q  162 tgtcattagatatataacttaaatcttgaattattttgaggttcatatat 211  Q
    ||||||| |||||||||||| ||||||||||||| |||||||||||||||    
T  20505161 tgtcatttgatatataactttaatcttgaattatattgaggttcatatat 20505210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 254 - 302
Target Start/End: Complemental strand, 26576486 - 26576438
Alignment:
Q  254 ttaaaaatgacattattattggcaatgtatcttacgattcataataaga 302  Q
    ||||||||| |||| |||||| ||||||||||||| |||||||||||||    
T  26576486 ttaaaaatgtcatttttattgacaatgtatcttacaattcataataaga 26576438  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 151 - 203
Target Start/End: Original strand, 44914975 - 44915027
Alignment:
Q  151 cactttgcttttgtcattagatatataacttaaatcttgaattattttgaggt 203  Q
    |||||| ||||| ||||| |||||||||| | |||||||||||||||||||||    
T  44914975 cacttttcttttctcatttgatatataacctgaatcttgaattattttgaggt 44915027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 178 - 218
Target Start/End: Complemental strand, 25181550 - 25181510
Alignment:
Q  178 acttaaatcttgaattattttgaggttcatatatcatatat 218  Q
    |||| ||| ||||||||||||||||||||||||| ||||||    
T  25181550 actttaatattgaattattttgaggttcatatatgatatat 25181510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 148 - 244
Target Start/End: Complemental strand, 30284506 - 30284410
Alignment:
Q  148 aaccactttgcttttgtcattagatatataacttaaatcttgaattattttgaggttcatatatcatatatgaaattgtaatttagttatgtcactt 244  Q
    |||||||||  |||||||||| ||||||| |||| | ||||| |||||||||| |||||||||| |||||| || |||||| || ||||||||||||    
T  30284506 aaccacttttattttgtcatttgatatatgacttgattcttgcattattttgatgttcatatatgatatatcaatttgtaaatttgttatgtcactt 30284410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 158 - 244
Target Start/End: Original strand, 30051669 - 30051755
Alignment:
Q  158 cttttgtcattagatatataacttaaatcttgaattattttgaggttcatatatcatatatgaaattgtaatttagttatgtcactt 244  Q
    ||||| ||||| |||||||||||| ||||||||||||||||||| ||||||||| |||||| || |  |||||| ||| ||||||||    
T  30051669 cttttatcatttgatatataacttgaatcttgaattattttgagattcatatatgatatatcaactaataattttgttgtgtcactt 30051755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 256 - 305
Target Start/End: Original strand, 25016797 - 25016846
Alignment:
Q  256 aaaaatgacattattattggcaatgtatcttacgattcataataagattc 305  Q
    |||||||||||| ||||| | ||||||||||| |||||||||||||||||    
T  25016797 aaaaatgacatttttattaggaatgtatcttaggattcataataagattc 25016846  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 148 - 241
Target Start/End: Original strand, 30035514 - 30035607
Alignment:
Q  148 aaccactttgcttttgtcattagatatataacttaaatcttgaattattttgaggttcatatatcatatatgaaattgtaatttagttatgtca 241  Q
    ||||| ||| ||||||||||| ||||||| |||| |||||| ||||||||| ||||| |||||  |||||| |  || |||||| |||||||||    
T  30035514 aaccatttttcttttgtcatttgatatatgacttgaatctttaattattttaaggttaatataatatatatcagcttataattttgttatgtca 30035607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 178 - 218
Target Start/End: Original strand, 11443398 - 11443438
Alignment:
Q  178 acttaaatcttgaattattttgaggttcatatatcatatat 218  Q
    |||| |||||||||||||||||| |||||||||| ||||||    
T  11443398 acttgaatcttgaattattttgaagttcatatatgatatat 11443438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 148 - 241
Target Start/End: Original strand, 29161129 - 29161222
Alignment:
Q  148 aaccactttgcttttgtcattagatatataacttaaatcttgaattattttgaggttcatatatcatatatgaaattgtaatttagttatgtca 241  Q
    ||||||||| ||||||||||| || |||| || | || |||||||||||||||||||||||||| |||||| |  || |||||| |||||||||    
T  29161129 aaccacttttcttttgtcatttgacatatgacatgaaccttgaattattttgaggttcatatatgatatatcagcttttaattttgttatgtca 29161222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 180 - 244
Target Start/End: Complemental strand, 19626761 - 19626697
Alignment:
Q  180 ttaaatcttgaattattttgaggttcatatatcatatatgaaattgtaatttagttatgtcactt 244  Q
    ||||||||| |||||||| ||||||||| | | |||||| || || |||||| ||||||||||||    
T  19626761 ttaaatcttcaattatttcgaggttcatgtttgatatatcaacttataattttgttatgtcactt 19626697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 158 - 218
Target Start/End: Original strand, 33895441 - 33895501
Alignment:
Q  158 cttttgtcattagatatataacttaaatcttgaattattttgaggttcatatatcatatat 218  Q
    ||||||||||| ||||||| ||| ||||||||||||||||| |||||||||||| ||||||    
T  33895441 cttttgtcatttgatatatgactcaaatcttgaattattttaaggttcatatataatatat 33895501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 151 - 218
Target Start/End: Complemental strand, 20553943 - 20553876
Alignment:
Q  151 cactttgcttttgtcattagatatataacttaaatcttgaattattttgaggttcatatatcatatat 218  Q
    |||||| ||||||||||| ||| ||| ||||||||||| ||||||||| ||||||  |||| ||||||    
T  20553943 cacttttcttttgtcatttgatttatgacttaaatcttcaattattttaaggttcgaatatgatatat 20553876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 186 - 244
Target Start/End: Complemental strand, 33008580 - 33008522
Alignment:
Q  186 cttgaattattttgaggttcatatatcatatatgaaattgtaatttagttatgtcactt 244  Q
    |||||||||||| ||||||||||||| |||||| || || ||  |||||||||||||||    
T  33008580 cttgaattatttcgaggttcatatatgatatatcaacttatatattagttatgtcactt 33008522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 304
Target Start/End: Original strand, 5232857 - 5232898
Alignment:
Q  263 acattattattggcaatgtatcttacgattcataataagatt 304  Q
    ||||| |||||| |||| ||||||||||||||||||||||||    
T  5232857 acatttttattgacaatatatcttacgattcataataagatt 5232898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 257 - 305
Target Start/End: Original strand, 3467494 - 3467541
Alignment:
Q  257 aaaatgacattattattggcaatgtatcttacgattcataataagattc 305  Q
    ||||||||||| || |||||||||||||||| |||||||||||| ||||    
T  3467494 aaaatgacatt-ttgttggcaatgtatcttaagattcataataatattc 3467541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 160 - 211
Target Start/End: Complemental strand, 4433141 - 4433090
Alignment:
Q  160 tttgtcattagatatataacttaaatcttgaattattttgaggttcatatat 211  Q
    ||||| ||| ||| ||| |||| |||||||||||||||||||||||||||||    
T  4433141 tttgtgatttgatttatgacttgaatcttgaattattttgaggttcatatat 4433090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 182 - 217
Target Start/End: Complemental strand, 32062090 - 32062055
Alignment:
Q  182 aaatcttgaattattttgaggttcatatatcatata 217  Q
    |||||||||||||||||||||||||||||| |||||    
T  32062090 aaatcttgaattattttgaggttcatatatgatata 32062055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 172 - 218
Target Start/End: Complemental strand, 32847570 - 32847524
Alignment:
Q  172 tatataacttaaatcttgaattattttgaggttcatatatcatatat 218  Q
    ||||| |||| |||||||||||||||||||| |||||||| ||||||    
T  32847570 tatatgacttgaatcttgaattattttgaggctcatatatgatatat 32847524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 174 - 218
Target Start/End: Complemental strand, 888002 - 887958
Alignment:
Q  174 tataacttaaatcttgaattattttgaggttcatatatcatatat 218  Q
    |||||||| |||||| ||||||||||||||||| |||| ||||||    
T  888002 tataacttgaatctttaattattttgaggttcacatatgatatat 887958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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