View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12531_low_7 (Length: 327)
Name: NF12531_low_7
Description: NF12531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12531_low_7 |
 | |
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Alignment Details
Target: chr6 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 2 - 311
Target Start/End: Complemental strand, 24245513 - 24245204
Alignment:
| Q |
2 |
aatcagaaggatgaactctaatttcgaaatggcttcctttcagagtctttactgtgagcttcgtgactgactgatccagaatcaaagaaatcgaagcatc |
101 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24245513 |
aatcagaaggatgaactctgatttcgaaatggcttcctttcagagtcttcactgtgagcttcatgactgactgatccagaatcaaagaaatcgaagcatc |
24245414 |
T |
|
| Q |
102 |
cggtggttagtgaaaaaagagaaataaaggttaaaacaatcaactttttctacttctattttacactttggagttcagttattttatcaagtgattgaca |
201 |
Q |
| |
|
| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24245413 |
cagtggttagtgaaaaaagagaaataaagcttaaaacaatcaactttttctacttctatttttcactttggagttcagttattttatcaagtgattgaca |
24245314 |
T |
|
| Q |
202 |
cccaacttcaagaacttaataataaaatgataatctgaagtggcctacctcattaagtctacatataatatgaaaatgataatttatagattgattactc |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24245313 |
cccaacttcaagaacttaataataaaatgataatctgaagtggcctacctcattaagtctacatataatatgaaaatgataatttatagattgattactc |
24245214 |
T |
|
| Q |
302 |
caactgatgt |
311 |
Q |
| |
|
|||||||||| |
|
|
| T |
24245213 |
caactgatgt |
24245204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 311
Target Start/End: Original strand, 11489791 - 11490101
Alignment:
| Q |
1 |
gaatcagaaggatgaactctaatttcgaaatggcttcctttcagagtctttactgtgagcttcgtgactgactgatccagaatcaaagaaatcgaagcat |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
11489791 |
gaatcagaaggatgaactctgatttcgaaatggcttcctttcagagtcttcactgtgagcttcatgactgactgatccagaatcaaagaaatcgaagcat |
11489890 |
T |
|
| Q |
101 |
ccggtggttagtgaaaaaagagaaataaaggttaaaacaatcaactttttctacttctattttacactttggagttcagttattttatcaagtgattgac |
200 |
Q |
| |
|
|| ||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
11489891 |
ccagtggttagtgaaaaaagagaaataaagcttaaaacaatcaacttttactacttctatttttcactttggagttcagttattttatcaagtgattgac |
11489990 |
T |
|
| Q |
201 |
acccaacttcaagaacttaataataaaatgataatctgaagtggcctacctcattaagtctacatataatatgaaaatgataatttatagattgattact |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11489991 |
acccaacttcaagaacttaataataaaatgataatctgaagtggcctacctcattaagtctacatataatatgaaaatgataatttatagattgattact |
11490090 |
T |
|
| Q |
301 |
ccaactgatgt |
311 |
Q |
| |
|
|||||| |||| |
|
|
| T |
11490091 |
ccaactaatgt |
11490101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 24 - 311
Target Start/End: Complemental strand, 13779451 - 13779164
Alignment:
| Q |
24 |
ttcgaaatggcttcctttcagagtctttactgtgagcttcgtgactgactgatccagaatcaaagaaatcgaagcatccggtggttagtgaaaaaagaga |
123 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
13779451 |
ttcgaaatggcttcctttcagagtcttcactgtgagcttcatgactgactgatccagaatcaaagaaatcgaagcatccagtggttagtgaaaaaagaga |
13779352 |
T |
|
| Q |
124 |
aataaaggttaaaacaatcaactttttctacttctattttacactttggagttcagttattttatcaagtgattgacacccaacttcaagaacttaataa |
223 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13779351 |
aataaagcttaaaacaatcaactttttctacttctatttttcactttggagttcagttattttatcaagtgattgacacccaacttcaagaacttaataa |
13779252 |
T |
|
| Q |
224 |
taaaatgataatctgaagtggcctacctcattaagtctacatataatatgaaaatgataatttatagattgattactccaactgatgt |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |
|
|
| T |
13779251 |
taaaatgataatctgaagtggcctacctcatttagtctacatataatatgaaaattataatttatagattgattactccaaatgatgt |
13779164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 19894365 - 19894055
Alignment:
| Q |
1 |
gaatcagaaggatgaactctaatttcgaaatggcttcctttcagagtctttactgtgagcttcgtgactgactgatccagaatcaaagaaatcgaagcat |
100 |
Q |
| |
|
|||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
19894365 |
gaatcagaaggatgaactctgattttgaaatggcttcctttcagagtcttcactgtgagcttcatgactgactgatccagaatcaaagaaatcgaagcat |
19894266 |
T |
|
| Q |
101 |
ccggtggttagtgaaaaaagagaaataaaggttaaaacaatcaactttttctacttctattttacactttggagttcagttattttatcaagtgattgac |
200 |
Q |
| |
|
|| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |||||| |
|
|
| T |
19894265 |
ccaatggttagtgaaaaaagagaaataaagcttaaaacaatcaactttttctacttctatttttcactttggagttaagttattttatcaagtcattgac |
19894166 |
T |
|
| Q |
201 |
acccaacttcaagaacttaataataaaatgataatctgaagtggcctacctcattaagtctacatataatatgaaaatgataatttatagattgattact |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
19894165 |
acccaacttcaagaacttaataataaaatgataatctgaagtggcctacctcactaaatctacatattatatgaaaatgataatttatagattgattact |
19894066 |
T |
|
| Q |
301 |
ccaactgatgt |
311 |
Q |
| |
|
|| |||||||| |
|
|
| T |
19894065 |
cctactgatgt |
19894055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 2 - 311
Target Start/End: Complemental strand, 32219680 - 32219371
Alignment:
| Q |
2 |
aatcagaaggatgaactctaatttcgaaatggcttcctttcagagtctttactgtgagcttcgtgactgactgatccagaatcaaagaaatcgaagcatc |
101 |
Q |
| |
|
||||| ||||||||||||| |||||||||| ||||||||||| |||||| ||||||| |||| ||| |||||||||| |||||||||||||||||| ||| |
|
|
| T |
32219680 |
aatcaaaaggatgaactctgatttcgaaattgcttcctttcaaagtcttcactgtgaacttcatgattgactgatccggaatcaaagaaatcgaagtatc |
32219581 |
T |
|
| Q |
102 |
cggtggttagtgaaaaaagagaaataaaggttaaaacaatcaactttttctacttctattttacactttggagttcagttattttatcaagtgattgaca |
201 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |||| |||||||||||| || ||||||||||||||||||||| |
|
|
| T |
32219580 |
cggtggttagttaaaaaagagaaataaaggttaaaacaatcaattttttctacttctctttttcactttggagttgaggtattttatcaagtgattgaca |
32219481 |
T |
|
| Q |
202 |
cccaacttcaagaacttaataataaaatgataatctgaagtggcctacctcattaagtctacatataatatgaaaatgataatttatagattgattactc |
301 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
32219480 |
cacaacttcaagaacttaataataaaatgataatctgaagcagcctacctcatgaagtctacagataatatgaaaatgataatttatagattgattactt |
32219381 |
T |
|
| Q |
302 |
caactgatgt |
311 |
Q |
| |
|
|||||||||| |
|
|
| T |
32219380 |
caactgatgt |
32219371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 45450649 - 45450719
Alignment:
| Q |
1 |
gaatcagaaggatgaactctaatttcgaaatggcttcctttcagagtctttactgtgagcttcgtgactga |
71 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||| |||||| || ||||||||| ||||||| |
|
|
| T |
45450649 |
gaatcagaaggatgaactctgatttcgaaatggcttcctttcaaagtcttcacagtgagcttcatgactga |
45450719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 542498 - 542606
Alignment:
| Q |
1 |
gaatcagaaggatgaactctaatttcgaaatggcttcctttcagagtctttactgtgagcttcgtgactgactgatccagaatcaaagaaatcgaagcat |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
542498 |
gaatcagaaggatgaactctgatttcgaaatggcttcctttcagagtcttcactgtgagcttcatgactgactgatccagaatcaaagaaatcgaagcat |
542597 |
T |
|
| Q |
101 |
ccggtggtt |
109 |
Q |
| |
|
||||||||| |
|
|
| T |
542598 |
ccggtggtt |
542606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 103 - 227
Target Start/End: Original strand, 18168776 - 18168896
Alignment:
| Q |
103 |
ggtggttagtgaaaaaagagaaataaaggttaaaacaatcaactttttctacttctattttacactttggagttcagttattttatcaagtgattgacac |
202 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| ||||||||||| |||| |||| ||||| | |||| || ||||||| |||||||||||||| |
|
|
| T |
18168776 |
ggtggttagtgaaaaaagagatataaaggttaaaa----aaactttttctaattctctttttcacttcgaagttaaggtattttaccaagtgattgacac |
18168871 |
T |
|
| Q |
203 |
ccaacttcaagaacttaataataaa |
227 |
Q |
| |
|
|| ||||||||||||||||||||| |
|
|
| T |
18168872 |
acaccttcaagaacttaataataaa |
18168896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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