View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12531_low_9 (Length: 277)
Name: NF12531_low_9
Description: NF12531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12531_low_9 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 28524431 - 28524250
Alignment:
| Q |
1 |
ccaatttatatataaactttatttcccatgtttcaatagttacttttattccttaaaataataaaatagtacgtgtgattttgttaagattaaccttgta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |
|
|
| T |
28524431 |
ccaatttatatataaactttatttcccatgtttcaatagttacttttattccttaaaataa---aatagtacgtgtgattttgttaagattaaccatgta |
28524335 |
T |
|
| Q |
101 |
tttccaccatttctactagacatttgatatatgtgtagcaccgacatttctgacggaacttggaaggtgtaccggtgtcagacac |
185 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28524334 |
tttccaccatttctactagacatttgatatatgtgtagcaccgacatttctgacggaacttggaaggtgtaccggtgtcagacac |
28524250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 212 - 251
Target Start/End: Complemental strand, 28524221 - 28524182
Alignment:
| Q |
212 |
caaattcttatggttgtatcagtgtcgtcgtgttgatgtc |
251 |
Q |
| |
|
|||||||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
28524221 |
caaattcttacggttgtatcagtgccgtcgtgttgatgtc |
28524182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University