View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12532_high_10 (Length: 332)
Name: NF12532_high_10
Description: NF12532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12532_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 316
Target Start/End: Complemental strand, 16686820 - 16686505
Alignment:
| Q |
1 |
ggtcaactggatagagatgtacaactgggttcttggcttcaaaggttgtgaaaactaatataatgacaatggaaacaatgatcaacgaaattattgaaac |
100 |
Q |
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| T |
16686820 |
ggtcaactggatagagatgtacaactgggttcttggcttcaaaggttgtgaaaactaatataatgacaatggaaacaatgatcaacgaaattattgaaac |
16686721 |
T |
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| Q |
101 |
caacaaaaagactttgaaacatttactaatcatgatttttggttctgtgggatatttggtgtaacttaattatgcaatgccaaaggttggtttatgggaa |
200 |
Q |
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| T |
16686720 |
caacaaaaagattttgaaacatttactaatcatgatttttggttctgtgggatatttggtataacttaattatgcaatgccaaaggttggtttatgggaa |
16686621 |
T |
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| Q |
201 |
aggtcaagatcaataaagcatggcgacacaagaaattttctctattagattctatttctttgtgcaattttttaggacaaggacattgctatttaataat |
300 |
Q |
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| T |
16686620 |
aggtcaagatcaataaagcatggcgacacaagaaattctctctattagattctatttctttgtgcaatttttaaggacaaggacattgctattttataat |
16686521 |
T |
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| Q |
301 |
gtggttagttagtttt |
316 |
Q |
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| T |
16686520 |
gtggttagttagtttt |
16686505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 107
Target Start/End: Complemental strand, 16619641 - 16619543
Alignment:
| Q |
12 |
tagagatgtacaactgggttcttggcttcaaaggttgtgaaaactaa---tataatgacaatggaaacaatgatcaacgaaattattgaaaccaacaaa |
107 |
Q |
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| T |
16619641 |
tagacatgtacatctgggttcttgggtttaaagattgtgaaaactaaggataaaatcacggtggcaacaatgatcaagaaaattattgacactaacaaa |
16619543 |
T |
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