View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12532_high_13 (Length: 232)
Name: NF12532_high_13
Description: NF12532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12532_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 11 - 214
Target Start/End: Original strand, 16003614 - 16003817
Alignment:
| Q |
11 |
gaggagcacagaaatagcggtatgactcgacttgtggaggaaaatggaaccagggtgaatatttgatcaacaacaaaggtctttaattttgagaattgga |
110 |
Q |
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| T |
16003614 |
gaggaacacagaaatagcggtatgactcgacttgtggaggaaaatggaaccagggtgaatatttgatcaacaacaaaggtctttaattttgagaattgaa |
16003713 |
T |
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| Q |
111 |
aggaaatcaatataaaatctaaaactacctctattttgtgatggatcttgcaagaacagaaccatgtttatggtggtaagagctatagaaaagcatggga |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16003714 |
aggaaatcaatataaaatctaaaactacctctattttgtgatggatcttgcaagaacagaaccatgtttatggtggtaagagctatagaaaagcatggga |
16003813 |
T |
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| Q |
211 |
aaaa |
214 |
Q |
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|||| |
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| T |
16003814 |
aaaa |
16003817 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 11 - 214
Target Start/End: Original strand, 26794994 - 26795197
Alignment:
| Q |
11 |
gaggagcacagaaatagcggtatgactcgacttgtggaggaaaatggaaccagggtgaatatttgatcaacaacaaaggtctttaattttgagaattgga |
110 |
Q |
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||||| |||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26794994 |
gaggaacacataaatagcggtatgactcgacttgtggaggaaaacggaactagggtgaatatttgatcaacaacaaaggtctttaattttgagaattgga |
26795093 |
T |
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| Q |
111 |
aggaaatcaatataaaatctaaaactacctctattttgtgatggatcttgcaagaacagaaccatgtttatggtggtaagagctatagaaaagcatggga |
210 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |
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| T |
26795094 |
aggaaatcaatatagaatctaaaactacctctattttgtgatggatcttgcaagaacagaaccatgtttatggtggtaacagctgtagaaaagcatggga |
26795193 |
T |
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| Q |
211 |
aaaa |
214 |
Q |
| |
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|||| |
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| T |
26795194 |
aaaa |
26795197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 174; Significance: 9e-94; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 21 - 214
Target Start/End: Original strand, 40721968 - 40722161
Alignment:
| Q |
21 |
gaaatagcggtatgactcgacttgtggaggaaaatggaaccagggtgaatatttgatcaacaacaaaggtctttaattttgagaattggaaggaaatcaa |
120 |
Q |
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||||||||||||||||||||||||| | |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40721968 |
gaaatagcggtatgactcgacttgtcgtggaaaacgaaaccagggtgaatatttgatcaacaacaaaggtctttaattttgagaattggaaggaaatcaa |
40722067 |
T |
|
| Q |
121 |
tataaaatctaaaactacctctattttgtgatggatcttgcaagaacagaaccatgtttatggtggtaagagctatagaaaagcatgggaaaaa |
214 |
Q |
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| T |
40722068 |
tataaaatctaaaactacctctattttgtgatggatcttgcaagaacataaccatgtttatggtggtaagagctatagaaaagcatgggaaaaa |
40722161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 72 - 214
Target Start/End: Complemental strand, 27222063 - 27221921
Alignment:
| Q |
72 |
tttgatcaacaacaaaggtctttaattttgagaattggaaggaaatcaatataaaatctaaaactacctctattttgtgatggatcttgcaagaacagaa |
171 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27222063 |
tttgatcaacaacaaaggtctttaattttgagaattggaaggaaatcaatatagaatctaaaactacctctattttgtgatggatcttgcaagaacagaa |
27221964 |
T |
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| Q |
172 |
ccatgtttatggtggtaagagctatagaaaagcatgggaaaaa |
214 |
Q |
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|||| |||||||||||||||||| |||||||||||||||||| |
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| T |
27221963 |
ccatatttatggtggtaagagctgcagaaaagcatgggaaaaa |
27221921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 27222875 - 27222822
Alignment:
| Q |
18 |
acagaaatagcggtatgactcgacttgtggaggaaaatggaaccagggtgaata |
71 |
Q |
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||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |
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| T |
27222875 |
acagaaatagcagtatgactcgacttgtggaggaaaacggaaccagggtgaata |
27222822 |
T |
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