View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12532_high_2 (Length: 649)
Name: NF12532_high_2
Description: NF12532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12532_high_2 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 16 - 407
Target Start/End: Original strand, 34869497 - 34869912
Alignment:
| Q |
16 |
tgaactgaactaaaaaagatcgagtaattttcaggagcatatgaatcttcaaa-------------tagtgttttcgtgtctttcataagctctcagtgt |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |
|
|
| T |
34869497 |
tgaactgaactaaaaaagatcgagtaattttcaggagcatatgaatcttcaaactcaaatgcttcgtggtgttttcgtgtctttcataagctctcagtgt |
34869596 |
T |
|
| Q |
103 |
cccaaaaaatgataactactcatttgacgagttgag----------------actgagttgaatactttgttgtaagttacacttcattgtcatgcaaag |
186 |
Q |
| |
|
||||| |||| |||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
34869597 |
cccaataaataataattactcatttgacgagttgagtgcttcatcagttgagactcagttgaatactttgttgtaagttacacttgattgtcatgcaaag |
34869696 |
T |
|
| Q |
187 |
aaaattgaagaaaaggaggcttataaaaccatagtctaatacatttagctactcatattcatatgagatatgaagactagttaatgttttcaattgtaga |
286 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
34869697 |
aaaattgaagaaaaggaggcttataaaaccatagtctaatacatttagctactcatattcatatgagatacgaagactagttaatgttttcaattgtaga |
34869796 |
T |
|
| Q |
287 |
ggtgtttataaaatttcatgtatgacaaacaattggttcatgttctgcattttattttattttatatgaaaaatgttattttgaatggtggtcgttgttt |
386 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34869797 |
ggtgtttataaaatttcatgtatgacaaacaattggttcatgttctgc-----attttattttatatgaaaaatgttattttgaatggtggtcgttgttt |
34869891 |
T |
|
| Q |
387 |
gtgatttcgaatgatgtaact |
407 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
34869892 |
gtgatttcgaatgatgtaact |
34869912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 514 - 629
Target Start/End: Original strand, 34870157 - 34870268
Alignment:
| Q |
514 |
agaagagtgtatatgttatgttatcttgacatagtgaggccaactggacaaaggtacaattttttaactttctattattagtctatttatcaacaactaa |
613 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |
|
|
| T |
34870157 |
agaagagtgtatatgttatgttatcttgacatagtgaggccaactggacaaaggtacaatttttaaactttctattattagtctatttatcaac----aa |
34870252 |
T |
|
| Q |
614 |
ctcaataacttatgta |
629 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
34870253 |
ctcaataacttatgta |
34870268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University