View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12532_high_5 (Length: 461)
Name: NF12532_high_5
Description: NF12532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12532_high_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 167; Significance: 3e-89; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 226 - 400
Target Start/End: Original strand, 25625405 - 25625579
Alignment:
| Q |
226 |
attgtgctgataaaatcttgttgataggtatgagtttcaaatgcaatatggttcaattggatggtctgttggtgcaactcttggctatgcacaagctgtc |
325 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25625405 |
attgtgctgataaaatcttgttgataggtatgagtttcaaatgcaatatggttcaattggatggtctgttggtgcaactcttggctatgcacaagctgtc |
25625504 |
T |
|
| Q |
326 |
cccgagaagcgagtgattgcttgcattggtgatggaagctttcaggtttgtcttgcataactacttaaagtatga |
400 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
25625505 |
cctgagaagcgagtgattgcttgcattggtgatggaagctttcaggtttgtcttgcataactacttaaagcatga |
25625579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 18 - 180
Target Start/End: Original strand, 25625206 - 25625368
Alignment:
| Q |
18 |
caaaagaacctttgagagtcaatgttatgttccaacatatacaacaaatgttgtctagtgaaacagttgtgattgctgagacaggggactcatggtttaa |
117 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25625206 |
caaaagaaccattgagagtcaatgttatgttccaacatatacaacaaatgttgtctagtgaaacagttgtgattgctgagacaggggactcatggtttaa |
25625305 |
T |
|
| Q |
118 |
ctgccaaaagttgaaattaccagagggatgtgggtaagtgttatgagaatatgatttgttgta |
180 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25625306 |
ctgccaaaagttgaaattaccggagggatgtgggtaagtgttatgagaatatgatttgttgta |
25625368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 229 - 400
Target Start/End: Original strand, 25605767 - 25605938
Alignment:
| Q |
229 |
gtgctgataaaatcttgttgataggtatgagtttcaaatgcaatatggttcaattggatggtctgttggtgcaactcttggctatgcacaagctgtcccc |
328 |
Q |
| |
|
|||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25605767 |
gtgctgataaaaccttgttggcaggtatgagtttcaaatgcaatatggttcaattggatggtctgttggtgcaactcttggctatgcacaagctgtcccc |
25605866 |
T |
|
| Q |
329 |
gagaagcgagtgattgcttgcattggtgatggaagctttcaggtttgtcttgcataactacttaaagtatga |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |
|
|
| T |
25605867 |
gagaagcgagtgattgcttgcattggtgatggaagctttcaggtttgtcttgcataactgcttaaagcatga |
25605938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 18 - 180
Target Start/End: Original strand, 25605574 - 25605736
Alignment:
| Q |
18 |
caaaagaacctttgagagtcaatgttatgttccaacatatacaacaaatgttgtctagtgaaacagttgtgattgctgagacaggggactcatggtttaa |
117 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||| |||||||| || ||||| | ||||||||||||||||||||||||||||||||| |
|
|
| T |
25605574 |
caaaagaacctttgagagttaatgttatgttccaacatatacaacagatgttgtcgagggaaactgctgtgattgctgagacaggggactcatggtttaa |
25605673 |
T |
|
| Q |
118 |
ctgccaaaagttgaaattaccagagggatgtgggtaagtgttatgagaatatgatttgttgta |
180 |
Q |
| |
|
||| ||||| |||||||| || |||||||||||||||||||| || ||| |||||||||||| |
|
|
| T |
25605674 |
ctgtcaaaaattgaaattgcccgagggatgtgggtaagtgttgagataatgtgatttgttgta |
25605736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 240 - 320
Target Start/End: Original strand, 25450988 - 25451068
Alignment:
| Q |
240 |
atcttgttgataggtatgagtttcaaatgcaatatggttcaattggatggtctgttggtgcaactcttggctatgcacaag |
320 |
Q |
| |
|
|||||||||||||| |||| ||||||||||||||||||||||||||||||| |||| |||||||| |||||||||||||| |
|
|
| T |
25450988 |
atcttgttgatagggatgactttcaaatgcaatatggttcaattggatggtatgttattgcaactcgtggctatgcacaag |
25451068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 101; Significance: 7e-50; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 254 - 382
Target Start/End: Original strand, 20436012 - 20436140
Alignment:
| Q |
254 |
tatgagtttcaaatgcaatatggttcaattggatggtctgttggtgcaactcttggctatgcacaagctgtccccgagaagcgagtgattgcttgcattg |
353 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| || ||||||||||||||||||||||||| |
|
|
| T |
20436012 |
tatgagttccaaatgcaatatggttcaattggatggtctgttggtgcaactcttggttatgctcaagctgttccggagaagcgagtgattgcttgcattg |
20436111 |
T |
|
| Q |
354 |
gtgatggaagctttcaggtttgtcttgca |
382 |
Q |
| |
|
|||||||||| || ||||||||||||||| |
|
|
| T |
20436112 |
gtgatggaagtttccaggtttgtcttgca |
20436140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 26 - 156
Target Start/End: Original strand, 20435661 - 20435791
Alignment:
| Q |
26 |
cctttgagagtcaatgttatgttccaacatatacaacaaatgttgtctagtgaaacagttgtgattgctgagacaggggactcatggtttaactgccaaa |
125 |
Q |
| |
|
|||||||| || |||||| | || |||||||| || | |||||||| |||||||| | ||| ||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
20435661 |
cctttgagggttaatgttctttttcaacatattcagaatatgttgtcgagtgaaactgctgttattgccgagacaggggactcatggtttaactgccaaa |
20435760 |
T |
|
| Q |
126 |
agttgaaattaccagagggatgtgggtaagt |
156 |
Q |
| |
|
|| ||||||| ||| | ||||| |||||||| |
|
|
| T |
20435761 |
agctgaaattgccaaaaggatgcgggtaagt |
20435791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 97 - 156
Target Start/End: Original strand, 20438775 - 20438834
Alignment:
| Q |
97 |
gacaggggactcatggtttaactgccaaaagttgaaattaccagagggatgtgggtaagt |
156 |
Q |
| |
|
|||||||||||| |||||||||||||||||| ||||||| ||| | |||||||||||| |
|
|
| T |
20438775 |
gacaggggactcttggtttaactgccaaaagctgaaattgccaaaaaaatgtgggtaagt |
20438834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 254 - 314
Target Start/End: Original strand, 20438558 - 20438621
Alignment:
| Q |
254 |
tatgagtttcaaatgcaatatggttcaattggatggtct---gttggtgcaactcttggctatg |
314 |
Q |
| |
|
|||||||| || ||||||||||| ||||||||||||||| || |||||||||||||| |||| |
|
|
| T |
20438558 |
tatgagttccagatgcaatatggatcaattggatggtctgtcgtcggtgcaactcttggttatg |
20438621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 101; Significance: 7e-50; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 254 - 382
Target Start/End: Original strand, 5332154 - 5332282
Alignment:
| Q |
254 |
tatgagtttcaaatgcaatatggttcaattggatggtctgttggtgcaactcttggctatgcacaagctgtccccgagaagcgagtgattgcttgcattg |
353 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| || ||||||||||||||||||||||||| |
|
|
| T |
5332154 |
tatgagttccaaatgcaatatggttcaattggatggtctgttggtgcaactcttggttatgctcaagctgttccggagaagcgagtgattgcttgcattg |
5332253 |
T |
|
| Q |
354 |
gtgatggaagctttcaggtttgtcttgca |
382 |
Q |
| |
|
|||||||||| || ||||||||||||||| |
|
|
| T |
5332254 |
gtgatggaagtttccaggtttgtcttgca |
5332282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 254 - 382
Target Start/End: Original strand, 5334178 - 5334306
Alignment:
| Q |
254 |
tatgagtttcaaatgcaatatggttcaattggatggtctgttggtgcaactcttggctatgcacaagctgtccccgagaagcgagtgattgcttgcattg |
353 |
Q |
| |
|
|||||||| || ||||||||||| ||||||||||||||||| |||||||||||||| ||||| |||||||| || | |||| |||||||||||||||||| |
|
|
| T |
5334178 |
tatgagttccagatgcaatatggatcaattggatggtctgtcggtgcaactcttggttatgctcaagctgttccggggaagtgagtgattgcttgcattg |
5334277 |
T |
|
| Q |
354 |
gtgatggaagctttcaggtttgtcttgca |
382 |
Q |
| |
|
|||||||||| || |||||| | |||||| |
|
|
| T |
5334278 |
gtgatggaagtttccaggttcgacttgca |
5334306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 26 - 156
Target Start/End: Original strand, 5331758 - 5331888
Alignment:
| Q |
26 |
cctttgagagtcaatgttatgttccaacatatacaacaaatgttgtctagtgaaacagttgtgattgctgagacaggggactcatggtttaactgccaaa |
125 |
Q |
| |
|
|||||||| || |||||| | || |||||||| || | |||||||| |||||||| | ||| ||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
5331758 |
cctttgagggttaatgttctttttcaacatattcagaatatgttgtcgagtgaaactgctgttattgccgagacaggggactcatggtttaactgccaaa |
5331857 |
T |
|
| Q |
126 |
agttgaaattaccagagggatgtgggtaagt |
156 |
Q |
| |
|
|| ||||||| ||| | ||||| |||||||| |
|
|
| T |
5331858 |
agctgaaattgccaaaaggatgcgggtaagt |
5331888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 266 - 373
Target Start/End: Original strand, 4627016 - 4627123
Alignment:
| Q |
266 |
atgcaatatggttcaattggatggtctgttggtgcaactcttggctatgcacaagctgtccccgagaagcgagtgattgcttgcattggtgatggaagct |
365 |
Q |
| |
|
||||| ||||| |||||||| ||||| || ||||| |||||||| || ||||| |||| || | ||||| |||||||| |||||||||||||| || | |
|
|
| T |
4627016 |
atgcagtatggatcaattggttggtcagtaggtgctactcttggatacgcacaggctgcaaccaataagcgtgtgattgcatgcattggtgatggcagtt |
4627115 |
T |
|
| Q |
366 |
ttcaggtt |
373 |
Q |
| |
|
|||||||| |
|
|
| T |
4627116 |
ttcaggtt |
4627123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University